View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9924_low_5 (Length: 335)
Name: NF9924_low_5
Description: NF9924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9924_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 9444597 - 9444279
Alignment:
| Q |
1 |
gtgagagtaacaagcttaacacggcaatgaggctgcaatattccaagttgtgggtccccgacaataacatatgtgtgttgatccaggcatgaagttgtat |
100 |
Q |
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| T |
9444597 |
gtgagagtaacaagcttaacacggcattgaggctgcaatattccaagttgtgggtccccgacaataacatatgtgtgttcatccaggcatgaagttgtat |
9444498 |
T |
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| Q |
101 |
ccgtataatacttatccacaacgttactaggtggacttgtacacttcaggtaaattacaggcctggataaatcaattctatcggaataaacaaacgtgga |
200 |
Q |
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| T |
9444497 |
ccgtataatatttatccacaacgttactaggtggacttgtacacttcaggtaaattacaggcctggataaatcaattctatcggaataatcaaacgtgga |
9444398 |
T |
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| Q |
201 |
attcgatcgacggaagctgtatttgtatgaattagtatctttttgggtaaaattgttgctgtataagaagaagtgagggagagaggagcaattggtaggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9444397 |
attcgatcgacggaagctgtatttgtatgaattagtatctttttgggtaaaattgtttctgtataagaagaagtgagggagagaggagcagttggtaggt |
9444298 |
T |
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| Q |
301 |
tgaatgtttgggtcaacaa |
319 |
Q |
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| T |
9444297 |
tgaatgtttgggtcaacaa |
9444279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 9417632 - 9417804
Alignment:
| Q |
1 |
gtgagagtaacaagcttaacacggcaatgaggctgcaatattccaagttgtgggtccccgacaataacatatgtgtgttgatccaggcatgaagttgtat |
100 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| ||||| |
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| T |
9417632 |
gtgagagtaacaagctcaacacggcattgaggctgcaatattccaaagtgtggatccccaacaataacatatgtttgttgatccaggcatgaagctgtat |
9417731 |
T |
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| Q |
101 |
ccgtataatacttatccacaacgttactaggtggacttgtacacttcaggtaaattacaggcctggataaatc |
173 |
Q |
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| T |
9417732 |
ccgcataatacatattcacatcattactaggtggacttgtacacttcaggtaaattacaggccaagataaatc |
9417804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 9424388 - 9424203
Alignment:
| Q |
1 |
gtgagagtaacaagcttaacacggcaatgaggctgcaatattccaagttgtgggtccccgacaataacatatgtgt---gttgatccaggcatgaagttg |
97 |
Q |
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||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |||||| ||||| ||| ||||| ||| ||| |||| || |
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| T |
9424388 |
gtgagagtaacaagcttaacacgacattgaggctccaatattccaagttgtgggtccccaacaatagcatatatgttgtgttgacccatgcaagaagatg |
9424289 |
T |
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| Q |
98 |
tatccgtataatacttatccacaacgttactaggtggacttgtacacttcaggtaaattacaggcctggataaatcaattctatcg |
183 |
Q |
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| T |
9424288 |
tatccgtataatacatattcacattgttactaggtggacttgtacagttcatgtaaattacaggcctagataaatcaattccatcg |
9424203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 9424115 - 9424046
Alignment:
| Q |
250 |
aaattgttgctgtataagaagaagtgagggagagaggagcaattggtaggttgaatgtttgggtcaacaa |
319 |
Q |
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|||||| ||| ||||||||||||| |||||||||||||||||||| | |||||||| || |||||||||| |
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| T |
9424115 |
aaattggtgcggtataagaagaagcgagggagagaggagcaattgttgggttgaatattagggtcaacaa |
9424046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 9417905 - 9417974
Alignment:
| Q |
250 |
aaattgttgctgtataagaagaagtgagggagagaggagcaattggtaggttgaatgtttgggtcaacaa |
319 |
Q |
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| T |
9417905 |
aaattggtgcggtatatgaagaagcgagggagagaggagcaattgttgggttgaatattagggtcaacaa |
9417974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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