View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9924_low_6 (Length: 291)
Name: NF9924_low_6
Description: NF9924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9924_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 34 - 267
Target Start/End: Original strand, 44407776 - 44408008
Alignment:
| Q |
34 |
ttctgcttgcgtttacacacagaggaaaagtacagtaaaataaaaagacgaaaagtacatctaatttagctaaaaagtagtgagggaaagaaataaacga |
133 |
Q |
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| T |
44407776 |
ttctgcttgcgtttacacacagaggaaaagtaaagtaaaataaaaagacgaaaagtacatctaatttagctaaaaagtagtgagggaaagaaataaatga |
44407875 |
T |
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| Q |
134 |
atagttttatgataacattttaactacaattttaagttggtttgtcataaaacttgcatcatcattataatcaaagtttaaaatctaattgagacagaaa |
233 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44407876 |
atagttttatgataacattttaactacaa-tttaagttggtttgtcataaaacttgcatcatcattataatcaaagtttaaaatctaattgagacggaaa |
44407974 |
T |
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| Q |
234 |
gtaaactgaattcccatttcgtgtaagtaattat |
267 |
Q |
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|||||||||| ||||||||| ||||||||||||| |
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| T |
44407975 |
gtaaactgaactcccatttcatgtaagtaattat |
44408008 |
T |
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