View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9924_low_8 (Length: 279)

Name: NF9924_low_8
Description: NF9924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9924_low_8
NF9924_low_8
[»] chr6 (10 HSPs)
chr6 (15-261)||(30876556-30876803)
chr6 (46-90)||(2457313-2457357)
chr6 (45-109)||(20868473-20868537)
chr6 (67-113)||(10003000-10003046)
chr6 (47-96)||(3737072-3737121)
chr6 (45-90)||(8594733-8594778)
chr6 (47-147)||(507794-507894)
chr6 (45-97)||(10156602-10156654)
chr6 (47-110)||(10334570-10334631)
chr6 (45-85)||(26693041-26693081)
[»] chr5 (9 HSPs)
chr5 (47-113)||(9634869-9634935)
chr5 (74-123)||(43283459-43283508)
chr5 (49-121)||(39159669-39159741)
chr5 (54-109)||(37443092-37443147)
chr5 (47-112)||(8977724-8977789)
chr5 (68-121)||(14956654-14956707)
chr5 (47-112)||(30974476-30974541)
chr5 (45-90)||(41991284-41991329)
chr5 (45-113)||(41970301-41970369)
[»] chr7 (6 HSPs)
chr7 (48-121)||(34925253-34925326)
chr7 (93-145)||(1791403-1791455)
chr7 (49-112)||(28989927-28989990)
chr7 (49-112)||(32736024-32736087)
chr7 (45-107)||(1668334-1668396)
chr7 (58-114)||(8558793-8558849)
[»] chr4 (6 HSPs)
chr4 (46-99)||(26275457-26275510)
chr4 (46-113)||(55097981-55098048)
chr4 (45-90)||(1099053-1099098)
chr4 (45-121)||(46899888-46899964)
chr4 (45-113)||(30617188-30617256)
chr4 (48-100)||(46714602-46714654)
[»] chr2 (7 HSPs)
chr2 (45-113)||(38434183-38434251)
chr2 (45-90)||(6701685-6701730)
chr2 (45-90)||(29395969-29396014)
chr2 (43-90)||(30358601-30358648)
chr2 (67-113)||(34786617-34786663)
chr2 (58-121)||(31200904-31200970)
chr2 (66-106)||(44460412-44460452)
[»] chr8 (3 HSPs)
chr8 (45-117)||(10765933-10766005)
chr8 (47-89)||(26481002-26481044)
chr8 (44-109)||(14928147-14928212)
[»] chr3 (5 HSPs)
chr3 (45-121)||(50376174-50376245)
chr3 (49-96)||(10275750-10275797)
chr3 (47-113)||(23790351-23790417)
chr3 (80-117)||(44622491-44622528)
chr3 (44-112)||(7198181-7198249)
[»] chr1 (4 HSPs)
chr1 (71-121)||(4541186-4541236)
chr1 (45-111)||(10363442-10363508)
chr1 (45-98)||(15189620-15189673)
chr1 (44-112)||(3234592-3234660)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 30876556 - 30876803
Alignment:
Q  15 gacacaaaaaagagaaaatcggcatcactaagtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30876556 gacacaaaaaagagaaaatcggcatcactaagtgttgtcaatcgcagatcacagaaaatagcgatttattcaaattacgctatgctacaatgctatagct 30876655  T
Q  115 gctatttaaaaatactatgtactaaattgtgtagcgtagaataataacagcggttaaaa-ttccgccacactatagtgctgtaacactgctatttgacaa 213  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  30876656 gctatttaaaaatactctgtactaaatcgtgtagcgtagaataataacagcggttaaaatttccgccacactatagtgctataacactgctatttgacaa 30876755  T
Q  214 cactgacggagagtcagacacggcttatatctatgttaagtaccacaa 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30876756 cactgacggagagtcagacacggcttatatctatgttaagtaccacaa 30876803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 2457357 - 2457313
Alignment:
Q  46 gtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaatt 90  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||    
T  2457357 gtgttgtcaatcgcagatcgcagaaaatagcagtttgttcaaatt 2457313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 20868473 - 20868537
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgcta 109  Q
    |||||||||||||||| ||| ||||||||||| |||| ||||||||   ||| ||||||||||||    
T  20868473 agtgttgtcaatcgcaaatcgcagaaaatagcaatttcttcaaattcaactaggctacaatgcta 20868537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 10003000 - 10003046
Alignment:
Q  67 agaaaatagcgatttgttcaaattacgctatgctacaatgctatagc 113  Q
    |||||||| | ||||||||||||| ||||| ||||||||||||||||    
T  10003000 agaaaataacaatttgttcaaatttcgctacgctacaatgctatagc 10003046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 3737121 - 3737072
Alignment:
Q  47 tgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgcta 96  Q
    |||||||||||| ||||||| || ||||| |||||||||||||| |||||    
T  3737121 tgttgtcaatcgtagatcaccgataatagggatttgttcaaattccgcta 3737072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 8594778 - 8594733
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaatt 90  Q
    |||||||||||||||| |||||| ||||||| ||| ||||||||||    
T  8594778 agtgttgtcaatcgcaaatcacataaaatagtgatgtgttcaaatt 8594733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 507894 - 507794
Alignment:
Q  47 tgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagctgctatttaaaaatactatgtactaaattgtgt 146  Q
    |||||||||||| | | | | |||||||||  |||||| |||||  |||||| |||| ||||| | | ||||||| | |||||| |||||||||||||||    
T  507894 tgttgtcaatcgtaaaacgcggaaaatagcagtttgtttaaattctgctatgttacagtgctacaaccgctatttgacaatactgtgtactaaattgtgt 507795  T
Q  147 a 147  Q
    |    
T  507794 a 507794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 10156602 - 10156654
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctat 97  Q
    |||||||||||| ||||||||| |||||||||| ||||||  |||| ||||||    
T  10156602 agtgttgtcaattgcagatcaccgaaaatagcggtttgtttgaatttcgctat 10156654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 10334570 - 10334631
Alignment:
Q  47 tgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctat 110  Q
    |||||||||||  |||||||||||  |||||||||||| |||||  |||| |||||||||||||    
T  10334570 tgttgtcaatcatagatcacagaa--tagcgatttgtttaaattctgctacgctacaatgctat 10334631  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 26693041 - 26693081
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttc 85  Q
    |||||| |||||| |||||| ||||||||||||||||||||    
T  26693041 agtgttatcaatcacagatcgcagaaaatagcgatttgttc 26693081  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 9634869 - 9634935
Alignment:
Q  47 tgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagc 113  Q
    |||||||||| |||||| ||||||||||||| |||||||||||| ||||| || ||| |||||||||    
T  9634869 tgttgtcaattgcagattacagaaaatagcggtttgttcaaattccgctacgcaacattgctatagc 9634935  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 43283459 - 43283508
Alignment:
Q  74 agcgatttgttcaaattacgctatgctacaatgctatagctgctatttaa 123  Q
    |||||||||||||||||||||||||||| | |||||||||  ||||||||    
T  43283459 agcgatttgttcaaattacgctatgctatagtgctatagcctctatttaa 43283508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 39159669 - 39159741
Alignment:
Q  49 ttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagctgctattt 121  Q
    ||||||||| |||||||| ||||||||   |||| | ||||| |||||||||| || ||||||||||||||||    
T  39159669 ttgtcaatcacagatcacggaaaatagatgtttgcttaaatttcgctatgctataacgctatagctgctattt 39159741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 37443092 - 37443147
Alignment:
Q  54 aatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgcta 109  Q
    ||||||||||||||||||||| |  ||||||||||||  |||| ||||||||||||    
T  37443092 aatcgcagatcacagaaaataacactttgttcaaattttgctaagctacaatgcta 37443147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 8977789 - 8977724
Alignment:
Q  47 tgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatag 112  Q
    |||||| ||| |||||||||  ||||||| | | |||||||||| | |||||||||||||||||||    
T  8977789 tgttgtgaattgcagatcactaaaaatagtgctgtgttcaaattcctctatgctacaatgctatag 8977724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 14956654 - 14956707
Alignment:
Q  68 gaaaatagcgatttgttcaaattacgctatgctacaatgctatagctgctattt 121  Q
    ||||||| || |||||||||||| | |||||| |||||||||||| ||||||||    
T  14956654 gaaaataacggtttgttcaaattcctctatgcgacaatgctatagatgctattt 14956707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 30974541 - 30974476
Alignment:
Q  47 tgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatag 112  Q
    |||| |||| |||||||  | |||||||| |||||||||||||| ||||| |||||| ||||||||    
T  30974541 tgttatcaaacgcagattgcggaaaatagtgatttgttcaaattccgctaggctacagtgctatag 30974476  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 41991329 - 41991284
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaatt 90  Q
    ||||||||||||  |||||| |||||||||||| ||||||||||||    
T  41991329 agtgttgtcaattacagatcgcagaaaatagcggtttgttcaaatt 41991284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 41970369 - 41970301
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagc 113  Q
    |||| |||||||  |||||| ||||||||||||  |||||||||||  |||| || |||||||||||||    
T  41970369 agtgctgtcaatttcagatcgcagaaaatagcgccttgttcaaattctgctaagcaacaatgctatagc 41970301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 34925253 - 34925326
Alignment:
Q  48 gttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagctgctattt 121  Q
    ||||||||| |||||||   |||||||||  ||||||||||||  ||||||||||||||||||||| |||||||    
T  34925253 gttgtcaattgcagatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctatagccgctattt 34925326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 1791403 - 1791455
Alignment:
Q  93 gctatgctacaatgctatagctgctatttaaaaatactatgtactaaattgtg 145  Q
    ||||||||||||||||||||| ||||||| | |||||| ||||||||||||||    
T  1791403 gctatgctacaatgctatagccgctatttgacaatactctgtactaaattgtg 1791455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 28989927 - 28989990
Alignment:
Q  49 ttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatag 112  Q
    |||||||| ||||||||  |||||||| |||||||||||||| ||||| || ||| ||||||||    
T  28989927 ttgtcaattgcagatcatggaaaatagtgatttgttcaaattccgctacgcaacactgctatag 28989990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 32736024 - 32736087
Alignment:
Q  49 ttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatag 112  Q
    |||||||| ||||||||| | |||||||| |||||||||||| ||||| || ||| ||||||||    
T  32736024 ttgtcaattgcagatcacgggaaatagcggtttgttcaaattccgctacgcaacactgctatag 32736087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 1668334 - 1668396
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgc 107  Q
    |||||||||||| |   ||||| |||||||||| |||||||||||| | ||||||||||||||    
T  1668334 agtgttgtcaattgtgaatcacggaaaatagcggtttgttcaaattccactatgctacaatgc 1668396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 8558793 - 8558849
Alignment:
Q  58 gcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagct 114  Q
    ||||||| || |||||||   |||||||||||| ||||||||||||||| |||||||    
T  8558793 gcagatcgcaaaaaatagtagtttgttcaaattccgctatgctacaatgttatagct 8558849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 26275457 - 26275510
Alignment:
Q  46 gtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgc 99  Q
    |||||||||||  |||||| ||||||||||||||||||||||||| ||||||||    
T  26275457 gtgttgtcaattacagatcgcagaaaatagcgatttgttcaaattccgctatgc 26275510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 55098048 - 55097981
Alignment:
Q  46 gtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagc 113  Q
    |||||||||||| |||||||   ||||||| | |||||||||| || |||||||||||||||||||||    
T  55098048 gtgttgtcaatcacagatcaagcaaaatagtggtttgttcaaagtatgctatgctacaatgctatagc 55097981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 1099053 - 1099098
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaatt 90  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||||    
T  1099053 agtgttgtcaatcacagatcacgaaaaatagcgatttgttcaaatt 1099098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 46899888 - 46899964
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagctgctattt 121  Q
    |||||||||||| |  ||||||||||||| | | |||||||||||| | |||||| ||| || ||||||||||||||    
T  46899888 agtgttgtcaattgtggatcacagaaaattgtgctttgttcaaatttccctatgcaacagtgttatagctgctattt 46899964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 30617188 - 30617256
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagc 113  Q
    |||||||||||| |  |||  |||||||||||| |||||||||||| | ||| || |||||||||||||    
T  30617188 agtgttgtcaattggggattgcagaaaatagcggtttgttcaaattccactacgcaacaatgctatagc 30617256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 46714654 - 46714602
Alignment:
Q  48 gttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgct 100  Q
    |||||||||||  |||||| |||||||| ||||||| |||||| |||||||||    
T  46714654 gttgtcaatcgttgatcacggaaaatagagatttgtgcaaattccgctatgct 46714602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 38434251 - 38434183
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagc 113  Q
    |||||||||||||||||| ||| |||||||||  ||||||||||||  |||||| |||| |||||||||    
T  38434251 agtgttgtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagc 38434183  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 6701730 - 6701685
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaatt 90  Q
    ||||||||||||||||||||| |||| |||| ||||||||||||||    
T  6701730 agtgttgtcaatcgcagatcatagaacatagtgatttgttcaaatt 6701685  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 29395969 - 29396014
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaatt 90  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||||    
T  29395969 agtgttgtcaattgcagatcacaaaaaatagcggtttgttcaaatt 29396014  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 30358648 - 30358601
Alignment:
Q  43 taagtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaatt 90  Q
    |||||||||||||||||||||| || || ||||| |||||||||||||    
T  30358648 taagtgttgtcaatcgcagatcgcaaaatatagcaatttgttcaaatt 30358601  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 34786617 - 34786663
Alignment:
Q  67 agaaaatagcgatttgttcaaattacgctatgctacaatgctatagc 113  Q
    ||||||||| | |||||||||||| | ||||||||||||||||||||    
T  34786617 agaaaatagtggtttgttcaaatttcactatgctacaatgctatagc 34786663  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 31200904 - 31200970
Alignment:
Q  58 gcagatcacagaaaatagcgatttgttcaaattacgctatgct---acaatgctatagctgctattt 121  Q
    |||||||||| |||||||| ||||||||||||| |||||| ||   ||| ||||||||| |||||||    
T  31200904 gcagatcacataaaatagcaatttgttcaaattccgctatactataacattgctatagccgctattt 31200970  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 44460452 - 44460412
Alignment:
Q  66 cagaaaatagcgatttgttcaaattacgctatgctacaatg 106  Q
    |||||||||||| |||||||||||| | |||||||||||||    
T  44460452 cagaaaatagcggtttgttcaaatttcactatgctacaatg 44460412  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 10765933 - 10766005
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagctgct 117  Q
    ||||||||||||||| ||  |||  ||||||||||||||||||||| || ||||||| | || ||||||||||    
T  10765933 agtgttgtcaatcgcggaatacaataaatagcgatttgttcaaattccgttatgctaaagtgttatagctgct 10766005  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 26481002 - 26481044
Alignment:
Q  47 tgttgtcaatcgcagatcacagaaaatagcgatttgttcaaat 89  Q
    ||||||||||| |||||| |||||||||||| |||||||||||    
T  26481002 tgttgtcaatcacagatcgcagaaaatagcggtttgttcaaat 26481044  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 14928147 - 14928212
Alignment:
Q  44 aagtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgcta 109  Q
    ||||||||||||| ||||||| |||||||||| |  |||||||||||  ||||||| ||| |||||    
T  14928147 aagtgttgtcaattgcagatcgcagaaaatagtgggttgttcaaattttgctatgcaacagtgcta 14928212  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 50376174 - 50376245
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagctgctattt 121  Q
    |||||||||||| |||||||  ||||||||||| ||||||||||     |||| ||||||||||||||| |||||||    
T  50376174 agtgttgtcaattgcagatcgtagaaaatagcggtttgttcaaa-----ctatactacaatgctatagccgctattt 50376245  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 10275750 - 10275797
Alignment:
Q  49 ttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgcta 96  Q
    ||||||||||| |||  ||||||||||| |||||||||||||||||||    
T  10275750 ttgtcaatcgcggattgcagaaaatagcaatttgttcaaattacgcta 10275797  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 23790351 - 23790417
Alignment:
Q  47 tgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatagc 113  Q
    ||||||||||||  ||||| ||||| ||||| |||| ||| ||| |||||||||||| |||||||||    
T  23790351 tgttgtcaatcgtggatcatagaaagtagcggtttgatcacattccgctatgctacagtgctatagc 23790417  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 44622491 - 44622528
Alignment:
Q  80 ttgttcaaattacgctatgctacaatgctatagctgct 117  Q
    |||||||||||  |||||||||||||||||||||||||    
T  44622491 ttgttcaaattctgctatgctacaatgctatagctgct 44622528  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 7198181 - 7198249
Alignment:
Q  44 aagtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatag 112  Q
    |||||||||||||||||||||| |||||| | | |||  |||||||| | ||| || ||||||||||||    
T  7198181 aagtgttgtcaatcgcagatcatagaaaagatcaattcattcaaattccactacgcaacaatgctatag 7198249  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 4541186 - 4541236
Alignment:
Q  71 aatagcgatttgttcaaattacgctatgctacaatgctatagctgctattt 121  Q
    |||||||||||||||||||||||||| |||  | || ||||||||||||||    
T  4541186 aatagcgatttgttcaaattacgctaagctgtagtgttatagctgctattt 4541236  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 10363508 - 10363442
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctata 111  Q
    |||||||||||||||||||||  |||||||||  |||||||||||| | ||||  |||| |||||||    
T  10363508 agtgttgtcaatcgcagatcatggaaaatagcattttgttcaaattccactatattacactgctata 10363442  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 15189673 - 15189620
Alignment:
Q  45 agtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatg 98  Q
    ||||||||||||| ||||||| ||||| ||| ||||||||||| || |||||||    
T  15189673 agtgttgtcaatcacagatcaaagaaactagtgatttgttcaagttccgctatg 15189620  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 3234660 - 3234592
Alignment:
Q  44 aagtgttgtcaatcgcagatcacagaaaatagcgatttgttcaaattacgctatgctacaatgctatag 112  Q
    ||||||||| ||||||||||  ||||||| || | |||||||||||| |||||  |||||||| |||||    
T  3234660 aagtgttgtaaatcgcagatagcagaaaacagtgctttgttcaaattccgctacactacaatgttatag 3234592  T

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