View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9924_low_9 (Length: 253)
Name: NF9924_low_9
Description: NF9924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9924_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 71 - 253
Target Start/End: Original strand, 44407578 - 44407760
Alignment:
| Q |
71 |
aacaagtatgatatttgtatactttcatatttccacgcttatttaacatctcatcttatcccatctctttttatacgacatcatcaaactatcacatttc |
170 |
Q |
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| T |
44407578 |
aacaagtatgatatttgtatactttcatatttccacgcttatttaacatctcatcttatcccatctctttttatacgacatcatcaaactatcacatttc |
44407677 |
T |
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| Q |
171 |
tttttctttgaaactttatacactcgaatgagtgtacaacaaacattttccaaaccataatcacaatatgtgttcatttagtt |
253 |
Q |
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| T |
44407678 |
tttttctttgaaactttatacactcgaatgagtgtacaacaaacattttccaaaccataatcacaatatgtgtacatttagtt |
44407760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 44407487 - 44407547
Alignment:
| Q |
18 |
gggaagcatccttctttatagcgattaaaaaatatatcaatcatctaaattacaacaagta |
78 |
Q |
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| T |
44407487 |
gggaagcatccttctttatagcgattaaaaaatatatcaatcatctaaattacaacaagta |
44407547 |
T |
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