View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_high_11 (Length: 329)
Name: NF9925_high_11
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 309
Target Start/End: Complemental strand, 50249076 - 50248815
Alignment:
| Q |
27 |
gctaaaatcagatagtccattgtgatattgtcgaactcgctgataaatgtagttattgctaaaatcatcgggtcctttatcggcatagtttggattactt |
126 |
Q |
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| T |
50249076 |
gctaaaatcacatagtccattgtgatattgtcgaactcgctgataaatgtagttattgctaaaatcaccgggtcctttatcggcatagtttggattactt |
50248977 |
T |
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| Q |
127 |
atattttgaaagttatgtttttgctataagaactccaaaacatgacttacataaatggacggacatctttatgtagttaggttcacacaagttttagtta |
226 |
Q |
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| T |
50248976 |
atattttgaaagttatgtttttgctataagaactccaaaacatga---------------------ctttttgtagttaggttcacacaagttttagtta |
50248898 |
T |
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| Q |
227 |
tatgcatcaattttctgtaaacatgttgtgaccttttgcatgagttactctttatttcacaaattgtttttaggaggatttgg |
309 |
Q |
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| T |
50248897 |
tatgcatcaattttctgtaaacatgttgtgactttttgcatgagttactctttatttcacaaattgtttttaggaggatttgg |
50248815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 50670395 - 50670470
Alignment:
| Q |
99 |
tcctttatcggcatagtttggattacttatattttgaaagttatgtttttgctataagaactccaaaacatgactt |
174 |
Q |
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| T |
50670395 |
tcctttattggcatagtttggattacttatattttgaaagttaaagttttgctaccagaactccaaaccatgactt |
50670470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 50665038 - 50665083
Alignment:
| Q |
102 |
tttatcggcatagtttggattacttatattttgaaagttatgtttt |
147 |
Q |
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| T |
50665038 |
tttattggcatagtttggattacttatattttgaaagttaagtttt |
50665083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 50665161 - 50665201
Alignment:
| Q |
269 |
agttactctttatttcacaaattgtttttaggaggatttgg |
309 |
Q |
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| T |
50665161 |
agttactatttctttcacaaattgtttttaggtggatttgg |
50665201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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