View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9925_high_17 (Length: 303)
Name: NF9925_high_17
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 290
Target Start/End: Complemental strand, 30959341 - 30959063
Alignment:
| Q |
24 |
atgaagttcatttccttaatttatttatttatgagataaagagataagaaaacatacttctgtgattagaacagtgttgtgtggaagaatcaacagatcc |
123 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30959341 |
atgaagatcatttccttaatttatttatttatgagataaagagataagaaaacatacttctgtgattagaacagtgttgtgtggaagaatcaacagatcc |
30959242 |
T |
|
| Q |
124 |
atctaaacaatcatcataattgcacgaggactttacatgt------------ttattgctctcccatttacaatctcctccttcatttcccaaacacctt |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30959241 |
atctaaacaatcatcataatagcacgaggactttacatgtttctcaatatcattattgctctcccatttacaatctcctccttcacttcccaaacacctt |
30959142 |
T |
|
| Q |
212 |
atgcattcctctttcagaatataattcaactcaaaccccttatccaaaccattttcaagaaaatcatgatcaaaataat |
290 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30959141 |
gagcattcctctttcatagtataattcaactcaaaccccttatccaaaccattttcaagaaaatcatgatcaaaataat |
30959063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 271
Target Start/End: Complemental strand, 31013126 - 31012899
Alignment:
| Q |
52 |
ttatgagataaagagataagaaaacatacttctgtgattagaacagtgttgtgtggaagaatcaacagatccatctaaacaatcatcataattgcacgag |
151 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||| || |||||||||| |||||| |||||||| ||| ||| |
|
|
| T |
31013126 |
ttatgagataaagagata-gaaaacatact---gtgattagaacattgttgtgtggaaaaatgaatagatccatctgaacaattatcataatagcaagag |
31013031 |
T |
|
| Q |
152 |
gactttacatgtt------------tattgctctcccatttacaatctcctccttcatttcccaaacaccttatgcattcctctttcagaatataattca |
239 |
Q |
| |
|
|| || ||||||| ||||| || |||||||||||||||| ||||| ||||||||||| || ||||||||||||| | ||||||||| |
|
|
| T |
31013030 |
gagttaacatgtttctcaatatccctattggacttccatttacaatctccttcttcacttcccaaacactttgcacattcctctttcacactataattca |
31012931 |
T |
|
| Q |
240 |
actcaaaccccttatccaaaccattttcaaga |
271 |
Q |
| |
|
||||||||| |||| ||||||| ||| |||| |
|
|
| T |
31012930 |
cctcaaacccattattcaaaccacttttaaga |
31012899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 31222324 - 31222287
Alignment:
| Q |
44 |
ttatttatttatgagataaagagataagaaaacatact |
81 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31222324 |
ttatatatttatgagataaagagataagaaaacatact |
31222287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University