View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_high_27 (Length: 247)
Name: NF9925_high_27
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 39491258 - 39491480
Alignment:
| Q |
15 |
agaaataagagccacgtcaaaattagaatctacttacaacctctcctttcgtgacacctattggttgattcctagagtcgttttatatttgtcattgttt |
114 |
Q |
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| T |
39491258 |
agaaataagagccacgtcaaaattagaatctacttacaacctctcctttcgtgacacctattggttgattcctagagtcgttttatatttgtcattgttt |
39491357 |
T |
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| Q |
115 |
atttcaaccacttcatctttttaataaagaaagacaagtatatttagaaatccctttatttgtctaatatttataaaaaccactagtttggtaatgattt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39491358 |
atttcaaccacttcatctttttaataaagaaagacaagtatatttagaaatccctttatttgtccaatatttataaaaaccactagtttggtaatgattt |
39491457 |
T |
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| Q |
215 |
ggggccatggctttctttaacac |
237 |
Q |
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||||||||||||||||||||||| |
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| T |
39491458 |
ggggccatggctttctttaacac |
39491480 |
T |
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