View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_high_31 (Length: 241)
Name: NF9925_high_31
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 880898 - 880723
Alignment:
| Q |
42 |
agtatgtgtttggttctgaggtgacaaaatttgatttggactaaaaatgtgttgaatcattattgattgtggttagatacatgtaaaactgtgtttagtt |
141 |
Q |
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| T |
880898 |
agtatgtgtttggttctgaggtgacaaaatttgatttggactaaaaatgtgttgaatcattattgattgtggttagatacatgtaaaactgtgtctagtt |
880799 |
T |
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| Q |
142 |
ttaagttagaattagaatcgtttacgggacaaaatttaaacatgttgaaattaactctaaacattctgaaatcaattttgac |
223 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
880798 |
ttaagtta------gaatcgtttacgggagaaaatttaaacatgttgaaattaactctaaatattctgaaatcaattttgac |
880723 |
T |
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