View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9925_high_32 (Length: 240)

Name: NF9925_high_32
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9925_high_32
NF9925_high_32
[»] chr6 (7 HSPs)
chr6 (15-240)||(27120886-27121112)
chr6 (130-236)||(27118590-27118696)
chr6 (145-236)||(27118345-27118436)
chr6 (130-236)||(27120427-27120533)
chr6 (149-218)||(27120377-27120446)
chr6 (154-237)||(27118276-27118359)
chr6 (154-237)||(27120821-27120904)
[»] chr8 (4 HSPs)
chr8 (80-237)||(35091658-35091812)
chr8 (72-240)||(35091154-35091320)
chr8 (130-218)||(13029168-13029256)
chr8 (149-237)||(35091297-35091384)
[»] chr1 (6 HSPs)
chr1 (123-237)||(49447152-49447266)
chr1 (138-217)||(12855799-12855878)
chr1 (178-236)||(42154493-42154551)
chr1 (134-237)||(12855497-12855600)
chr1 (66-108)||(49447087-49447129)
chr1 (188-237)||(42154424-42154473)
[»] chr3 (1 HSPs)
chr3 (130-237)||(22505722-22505828)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 27121112 - 27120886
Alignment:
Q  15 aattacaatttatcttctcactaaatctga-gttccctacttaaaatctatcaaatcccttattattaaagcttaacccctctagctaatcccaaaacta 113  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27121112 aattacaatttatcttctcactaaatctgacgttccctacttaaaatctatcaaattccttattattaaagcttaacccctctagctaatcccaaaacta 27121013  T
Q  114 annnnnnnccccttcatttgccacacattaaatgctcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatcca 213  Q
    |        |||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  27121012 aatttttttcccttcatttgccacacattgaatgctcacatttgactttctcattatctttgccacgcactaaatgctcctaaacctctataatcatcca 27120913  T
Q  214 taatcgtgtttgacattctcatttcct 240  Q
    |||||||||||||||||||||||||||    
T  27120912 taatcgtgtttgacattctcatttcct 27120886  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 27118696 - 27118590
Alignment:
Q  130 tttgccacacattaaatgctcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacat 229  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||| || |||||||||||| |||||| ||| |||||| |||||||||||||||| |    
T  27118696 tttgccacacattaaatgctgacatttgactttctcattctctttgccacacactaaatgctcttaaacccctaccatcattcataatcgtgtttgacct 27118597  T
Q  230 tctcatt 236  Q
    |||||||    
T  27118596 tctcatt 27118590  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 27118436 - 27118345
Alignment:
Q  145 atgctcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacattctcatt 236  Q
    ||||||||||||||| |||| |||  |||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||    
T  27118436 atgctcacatttgactttctaatttcctttgctacgcactaaatgctcctaaacccctattatcatccataatcgtgtttgaccttctcatt 27118345  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 27120533 - 27120427
Alignment:
Q  130 tttgccacacattaaatgctcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacat 229  Q
    |||| ||| ||||||||| ||||||||||| ||| ||||  |||||  |||||||||||||||||||| | | |||||| |||||||||  |||||||||    
T  27120533 tttgacacgcattaaatgttcacatttgactttcacattccctttgtcacgcactaaatgctcctaaatcccgatcatcgtccataatcacgtttgacat 27120434  T
Q  230 tctcatt 236  Q
    |||||||    
T  27120433 tctcatt 27120427  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 27120446 - 27120377
Alignment:
Q  149 tcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatc 218  Q
    |||| |||||||||||||||  |||||  || || ||||||||| |||||||| ||||||||||||||||    
T  27120446 tcacgtttgacattctcattccctttgtcacacattaaatgctcttaaacctcgatcatcatccataatc 27120377  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 27118359 - 27118276
Alignment:
Q  154 tttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacattctcattt 237  Q
    |||||| ||||||||  |||||  || || |||||| |||||||||  ||| |||||||||||||  |||||||||||||||||    
T  27118359 tttgaccttctcattccctttgtcacacattaaatgttcctaaacccttattatcatccataatcacgtttgacattctcattt 27118276  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 27120904 - 27120821
Alignment:
Q  154 tttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacattctcattt 237  Q
    |||||||||||||||  |||||| || || ||||||||| |||||  ||||||||||| ||||||  ||||||  |||||||||    
T  27120904 tttgacattctcatttcctttgccacacattaaatgctcttaaacacctatcatcatctataatcacgtttgatcttctcattt 27120821  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 237
Target Start/End: Complemental strand, 35091812 - 35091658
Alignment:
Q  80 taaagcttaacccctctagctaatcccaaaactaannnnnnnccccttcatttgccacacattaaatgctcacatttgacattctcattatctttgcaac 179  Q
    ||||||||||||||||||||||| |||||  ||||        |||| | |||||||| ||||||||||||||||||| | ||||||||  |||||| ||    
T  35091812 taaagcttaacccctctagctaaacccaaccctaattttt---ccctccctttgccacgcattaaatgctcacatttgtccttctcattccctttgcgac 35091716  T
Q  180 gcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacattctcattt 237  Q
     ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  35091715 acactaaatgctcctaaacccctatcatcatccataatcatgtttgacattctcattt 35091658  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 35091154 - 35091320
Alignment:
Q  72 cttattattaaagcttaacccctctagctaatcccaaaactaannnnnnnccccttcatttgccacacattaaatgctcacatttgacattctcattatc 171  Q
    |||||||||||||||||||||||||||| || |||||  ||||        |||| | |||||| | ||||||||||||||||||||| ||||||||  |    
T  35091154 cttattattaaagcttaacccctctagccaaccccaaccctaatttttt--ccctccctttgccgcgcattaaatgctcacatttgaccttctcattccc 35091251  T
Q  172 tttgcaacgcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacattctcatttcct 240  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||||    
T  35091252 tttgccacacactaaatgctcctaaacccctatcatcatccataatcacgtttgaccttctcatttcct 35091320  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 13029256 - 13029168
Alignment:
Q  130 tttgccacacattaaatgctcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatc 218  Q
    |||||||  |||||||||||||||| |||| || |||||  |||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  13029256 tttgccatgcattaaatgctcacatatgaccttttcatttcctttgccacgcattaaatgctcctaaacccctatcatcatccataatc 13029168  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 35091297 - 35091384
Alignment:
Q  149 tcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacattctcattt 237  Q
    |||| |||||| ||||||||  |||||| || || |||||||||||||||| |||||||| | ||||||| |||||||| |||||||||    
T  35091297 tcacgtttgaccttctcatttcctttgccacacattaaatgctcctaaacc-ctatcatcgttcataatcatgtttgaccttctcattt 35091384  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 49447152 - 49447266
Alignment:
Q  123 cccttcatttgccacacattaaatgctcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatcgtgt 222  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||  |||||| |||||||||||||||||||| | |||  || ||||||||||   |    
T  49447152 cccttcatttgccacacattaaatgctcaaatttgactttctcattccctttgccacgcactaaatgctcctaaatccctacaattatccataatcacat 49447251  T
Q  223 ttgacattctcattt 237  Q
    |||||||||||||||    
T  49447252 ttgacattctcattt 49447266  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 12855878 - 12855799
Alignment:
Q  138 acattaaatgctcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataat 217  Q
    |||||||||||||| |||||||||||||||| ||||||| || ||  ||||  ||||||||| |||| ||||||||||||    
T  12855878 acattaaatgctcaaatttgacattctcattctctttgccacacatcaaatcttcctaaacccctattatcatccataat 12855799  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 42154551 - 42154493
Alignment:
Q  178 acgcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacattctcatt 236  Q
    ||||| ||||||||||||||||||||||||||| ||||||   ||||||||||||||||    
T  42154551 acgcattaaatgctcctaaacctctatcatcattcataattacgtttgacattctcatt 42154493  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 12855600 - 12855497
Alignment:
Q  134 ccacacattaaatgctcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacattctc 233  Q
    |||| |||||||||||| ||||| |||||||||||  |||||   |||| ||||||||| ||||||  ||| |||||||||||||  |||||||  ||||    
T  12855600 ccacgcattaaatgctctcatttaacattctcattccctttgtcgcgcattaaatgctcttaaacccatataatcatccataatcacgtttgaccatctc 12855501  T
Q  234 attt 237  Q
    ||||    
T  12855500 attt 12855497  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 49447087 - 49447129
Alignment:
Q  66 aaatcccttattattaaagcttaacccctctagctaatcccaa 108  Q
    ||||| |||||||||||| |||||||||||||||||| |||||    
T  49447087 aaatctcttattattaaatcttaacccctctagctaaccccaa 49447129  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 42154473 - 42154424
Alignment:
Q  188 tgctcctaaacctctatcatcatccataatcgtgtttgacattctcattt 237  Q
    ||||| |||||| ||||||||||||||||||  |||||||||| ||||||    
T  42154473 tgctcataaacccctatcatcatccataatcacgtttgacattttcattt 42154424  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 22505722 - 22505828
Alignment:
Q  130 tttgccacacattaaatgctcacatttgacattctcattatctttgcaacgcactaaatgctcctaaacctctatcatcatccataatcgtgtttgacat 229  Q
    |||||||| ||||||||| | |||||| |||||||||||  |||| | || ||||||||||||||||||| ||||||||||  ||||||  ||||||| |    
T  22505722 tttgccacgcattaaatgtttacattt-acattctcattccctttaccactcactaaatgctcctaaacccctatcatcatttataatcacgtttgacct 22505820  T
Q  230 tctcattt 237  Q
    ||||||||    
T  22505821 tctcattt 22505828  T

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