View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_high_6 (Length: 418)
Name: NF9925_high_6
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 42007088 - 42006701
Alignment:
| Q |
14 |
agaggtcaagatttaaaatcgagtttctcaggatttgtgatccttgatcatgagaaaaatgtagccaattaagtacgacacatattcaattgtggctgca |
113 |
Q |
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| T |
42007088 |
agaggtcaagatttaaaatcgagtttctcaggatttgtgatccttgatcatgagaaaaatgtagccaattaagtacgacacatattcaattgtggctgca |
42006989 |
T |
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| Q |
114 |
atgtgaccagaaagatcaaaattttaaatcgtggttatgtcacagttgtgatcctggtctgtgagaaaattaaagtcaataaggtatgatacaagtgcgg |
213 |
Q |
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| T |
42006988 |
atgtgaccagaaagatcaaaattt-aaatcgtggttatgtcacagttgtgatcctggtctgtgagaaaattaaagtcaataaggtatgatacaagtgcgg |
42006890 |
T |
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| Q |
214 |
ttgtggttaggatgaaatcaccaagatcgaggttttaaattgcatttccatcatgattgtgttgtgattcctcatattgggcacattgcggtccattagg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
42006889 |
ttgtggttaggatgaaatcaccaagatcgaggttttaaattgcatttccatcatgattgtgttgtgattcctcatattgggcacattgcagtccagtagg |
42006790 |
T |
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| Q |
314 |
tatgtgccgctgtgtggctacaattgcaatcgtgatacggttaaggagatcaaagttttaaactataactgcttcacgattgtattgtg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42006789 |
tatgtgccgctgtgtggctacaattgcaatcgtgatacggttaaggagatcaaagttttaaactatgactgcttcacgattgtattgtg |
42006701 |
T |
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