View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_1 (Length: 733)
Name: NF9925_low_1
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 446 - 588
Target Start/End: Complemental strand, 30402858 - 30402716
Alignment:
| Q |
446 |
aaacaagaacgaaatctggatatgtattttctcatacctgtgaatctccttcaacgatttgtctatgcatgttctatgaaattcatgattgcaaggcaga |
545 |
Q |
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| T |
30402858 |
aaacaagaaggaaatctggatatctattttctcatacctgtgaatctccttcaaccatttgtctatgcatgttctatgaaattcatgattgcaaggcaga |
30402759 |
T |
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| Q |
546 |
actcgcacgctgtctccatcattatactctacaaggcatatat |
588 |
Q |
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| T |
30402758 |
acacgcacgctgtctccatcattatactctacaaggcatatat |
30402716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 30403028 - 30402858
Alignment:
| Q |
1 |
gtgtcccatgattgaaaatatgtatgctataaattttttgctttcgaagttattttatgcagatgtgcatgcatctctggttcc-----tcatacgtaca |
95 |
Q |
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| T |
30403028 |
gtgtcccatgattgaaaatatgtacgctataaattttttgcttttgaagttattttatgcagatgcgcgtgcatctctggttcctcgtatcatatgtaca |
30402929 |
T |
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| Q |
96 |
ggtaatatggatatgtttgaggtcttttgtattgga--gaaatggtgcaaatgggtaactctagtgataga |
164 |
Q |
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| T |
30402928 |
ggtaatatggatatgtttcagatcttctgtattggagggaaatggtgcaaatgtgtaactctagtgataga |
30402858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 588
Target Start/End: Original strand, 10783967 - 10784077
Alignment:
| Q |
478 |
catacctgtgaatctccttcaacgatttgtctatgcatgttctatgaaattcatgattgcaaggcagaactcgcacgctgtctccatcattatactctac |
577 |
Q |
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| T |
10783967 |
catacctgtgaacctctttcagccacttgtctatacatgttgtatgaaattcatgatgacaaggaagtactcgcatgctgtctccatcttcgtactccac |
10784066 |
T |
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| Q |
578 |
aaggcatatat |
588 |
Q |
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| T |
10784067 |
aaggcatatat |
10784077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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