View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9925_low_10 (Length: 372)

Name: NF9925_low_10
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9925_low_10
NF9925_low_10
[»] chr1 (18 HSPs)
chr1 (4-356)||(2019546-2019894)
chr1 (4-356)||(2010327-2010681)
chr1 (1-356)||(2011734-2012091)
chr1 (3-312)||(2006228-2006558)
chr1 (1-134)||(6601881-6602014)
chr1 (1-125)||(3372462-3372586)
chr1 (10-125)||(3361499-3361614)
chr1 (1-73)||(3218709-3218781)
chr1 (8-108)||(3345323-3345423)
chr1 (34-122)||(6592641-6592729)
chr1 (1-117)||(4335155-4335271)
chr1 (174-230)||(6601779-6601835)
chr1 (21-71)||(3340300-3340350)
chr1 (184-221)||(2948497-2948534)
chr1 (184-221)||(3340472-3340509)
chr1 (20-113)||(3349173-3349266)
chr1 (184-225)||(4323139-4323180)
chr1 (1-137)||(4323236-4323372)
[»] chr2 (7 HSPs)
chr2 (1-137)||(20934232-20934368)
chr2 (8-137)||(39273828-39273957)
chr2 (1-113)||(20952776-20952888)
chr2 (181-235)||(20923438-20923492)
chr2 (35-137)||(20926881-20926984)
chr2 (23-137)||(20923271-20923385)
chr2 (184-234)||(20952962-20953012)
[»] chr4 (1 HSPs)
chr4 (1-136)||(21237307-21237442)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 2019546 - 2019894
Alignment:
Q  4 ggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgc 103  Q
    |||||||||||||||   ||| ||| || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2019546 ggtgatgtaatagaccgaattttgttacgcttgcctattagggacgctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgc 2019645  T
Q  104 caaatcttgtatttaataaacaatgtgtctctgcaacagtcccttttgttatcggaggaaagcttttggcaattatcgaccatgtacttttactttattc 203  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2019646 caaatcttgtatttaataaacaacgtgtctctgcaacagccccttttgttatcggaggaaagcttttggcaattattgatcatgtacttttactttattc 2019745  T
Q  204 ttggccaatcaacaagttcaagctctctgattgtggagtgatcagtgtgactgctcttgacaggtggatttttcatctaatcagaaggtctatcaaagat 303  Q
      |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  2019746 cgggccaatcaacaagttcaagctctctgattgtggtgtgatcagtgtgactgctcttgacaggtggatttttcatctaaccaggaggtctatcaaagat 2019845  T
Q  304 cttgtgctggccgggaatctcaaaaggacaatcgtataagataccttggtgct 356  Q
    ||||||||    ||||||||||||||||||||| |||||||||||||||||||    
T  2019846 cttgtgct----gggaatctcaaaaggacaatcatataagataccttggtgct 2019894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 2010327 - 2010681
Alignment:
Q  4 ggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgc 103  Q
    |||||||||||||||   ||| ||| || |||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||| ||||||| |    
T  2010327 ggtgatgtaatagaccgaattttgttacgcttgcctattagggacgttgtgagaacaagtgttttatgcaacaaatggaggtacaaatggaccacaatac 2010426  T
Q  104 caaatcttgtatttaataaacaatgtgtctctgcaacagtcc------cttttgttatcggaggaaagcttttggcaattatcgaccatgtacttttact 197  Q
    |||||||||| ||| |||||||||||||||||||||||  ||      |||| |||||||   ||||||||||||||||||| || ||||||||||||||    
T  2010427 caaatcttgtgtttgataaacaatgtgtctctgcaacatcccatcgccctttagttatcgagagaaagcttttggcaattattgatcatgtacttttact 2010526  T
Q  198 ttattcttggccaatcaacaagttcaagctctctgattgtggagtgatcagtgtgactgctcttgacaggtggatttttcatctaatcagaaggtctatc 297  Q
    ||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||||||| |||||||||||||    
T  2010527 ttattccgggccaatcaacaagttcaagctctctgattgtggtgtgatcagtgtgactgcttttgataggtagatttttcatctaaccagaaggtctatc 2010626  T
Q  298 aaagatcttgtgctggccgggaatctcaaaaggacaatcgtataagataccttggtgct 356  Q
    ||| | |||||| |     | |||||| ||||||||| |||||||||||||||||||||    
T  2010627 aaaaagcttgtgat----tgaaatctcgaaaggacaaccgtataagataccttggtgct 2010681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 2011734 - 2012091
Alignment:
Q  1 ccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaa 100  Q
    ||||||||||||||||||  |||| |||||  ||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||||||||  |||||    
T  2011734 ccaggtgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtattttatcaaacaaatggaggtacaaatggatcacaa 2011833  T
Q  101 tgccaaatcttgtatttaataaacaatgtgtctctgcaacagt------cccttttgttatcggaggaaagcttttggcaattatcgaccatgtactttt 194  Q
    | ||||||||||| ||| ||  ||||||||| |||||||||        ||||   | ||||    ||||||||||||||||||||||||||||||||||    
T  2011834 taccaaatcttgtgtttgattcacaatgtgtgtctgcaacatctgaacaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtactttt 2011933  T
Q  195 actttattcttggccaatcaacaagttcaagctctctgattgtggagtgatcagtgtgactgctcttgacaggtggatttttcatctaatcagaaggtct 294  Q
    |||||||| | ||||||||||||||||||||||||||  || |||  | || |||| |||||||||||| ||||||||||||||||||| ||||||||||    
T  2011934 actttattatgggccaatcaacaagttcaagctctctccttttggtctcattagtgcgactgctcttgataggtggatttttcatctaaccagaaggtct 2012033  T
Q  295 atcaaagatcttgtgctggccgggaatctcaaaaggacaatcgtataagataccttggtgct 356  Q
    |||||||| ||||||||    |||| | || | ||||||||| |||||||||||||||||||    
T  2012034 atcaaagagcttgtgct----gggattatcgataggacaatcatataagataccttggtgct 2012091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 3 - 312
Target Start/End: Original strand, 2006228 - 2006558
Alignment:
Q  3 aggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2006228 aggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaata 2006327  T
Q  103 ccaaatcttgtatttaataaacaatgtgtctctgcaaca-------gtccc--------ttttgttatcggaggaaagcttttggcaattatcgaccatg 187  Q
    ||||||||||| ||| |||||||||||||||||||||||       || ||        ||| | ||| |  ||||||||| ||| |||||| || || |    
T  2006328 ccaaatcttgtgtttgataaacaatgtgtctctgcaacatccaaatgttccgaactttttttagatatggagggaaagcttatggaaattattgatcagg 2006427  T
Q  188 tacttttactttattcttggccaatcaacaagttcaagctctctgattgtggag------tgatcagtgtgactgctcttgacaggtggatttttcatct 281  Q
    ||||||||||||||||| ||||||||||||||||| || |||||  |||||| |      | || |||| |||||||||||| |||||||||||||||||    
T  2006428 tacttttactttattctgggccaatcaacaagttccagatctctcgttgtggtgtcaatctcattagtgagactgctcttgataggtggatttttcatct 2006527  T
Q  282 aatcagaaggtctatcaaagatcttgtgctg 312  Q
    || || ||| ||||||||||| |||||||||    
T  2006528 aaccaaaagatctatcaaagagcttgtgctg 2006558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 6602014 - 6601881
Alignment:
Q  1 ccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaa 100  Q
    |||||| || |||||||| | ||||| |||   |||||||||| |||||| |||||||||||| ||||||| | |||||||||||||||||||||||||     
T  6602014 ccaggtcatataatagaccaaattctctcaattttgccaattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtacaaatgggccacac 6601915  T
Q  101 tgccaaatcttgtatttaataaacaatgtgtctc 134  Q
    | ||||||||||| ||| |||  |||||| ||||    
T  6601914 ttccaaatcttgtgtttgatagccaatgtatctc 6601881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 3372462 - 3372586
Alignment:
Q  1 ccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaa 100  Q
    |||||| ||||||||||  ||||||| |||| | |||||||||  ||||| |||||||||||||||||||||| ||  |||||| ||||||||  ||||     
T  3372462 ccaggtcatgtaatagatcagattctctcactcatgccaattaaagaagcagtgagaacaagtgttttatccagcagctggaggaacaaatggtacacac 3372561  T
Q  101 tgccaaatcttgtatttaataaaca 125  Q
    | ||||||||||| ||||| |||||    
T  3372562 taccaaatcttgtgtttaacaaaca 3372586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 3361499 - 3361614
Alignment:
Q  10 gtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgccaaatc 109  Q
    ||||||||| ||||  ||||| |||||||||| | |||||| |||||||||||| ||||||||| |||||||||  ||||||||  |||  | |||||||    
T  3361499 gtaatagaccagatcttgtcatacttgccaatcaaggaagcagtgagaacaagtattttatccagcaaatggagtaacaaatggtacacgctaccaaatc 3361598  T
Q  110 ttgtatttaataaaca 125  Q
    |||||||| |||||||    
T  3361599 ttgtatttgataaaca 3361614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3218781 - 3218709
Alignment:
Q  1 ccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatcca 73  Q
    |||||| ||||||||||  ||||||| ||| ||||||||||||||||||| |||| |||||||||||| ||||    
T  3218781 ccaggtcatgtaatagatcagattctctcatacttgccaattagggaagcagtgaaaacaagtgttttgtcca 3218709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 3345423 - 3345323
Alignment:
Q  8 atgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgccaaa 107  Q
    ||||| ||||| ||||||| ||  ||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||  |||||| |  |||||| |||||    
T  3345423 atgtagtagaccagattctatcttacttgccaattagggaagcagtgagaataagtgttatatccaaaaaatggagaaacaaattgtacacaataccaaa 3345324  T
Q  108 t 108  Q
    |    
T  3345323 t 3345323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 6592729 - 6592641
Alignment:
Q  34 ttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgccaaatcttgtatttaataa 122  Q
    |||||||||| |||||| |  ||||||||| ||||||| | ||| ||||||||||||||| ||||| | ||||||||||| ||| ||||    
T  6592729 ttgccaattaaggaagcagccagaacaagtattttatctaccaactggaggtacaaatggaccacacttccaaatcttgtgtttgataa 6592641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4335271 - 4335155
Alignment:
Q  1 ccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaa 100  Q
    |||||| ||||||||||| ||||| ||||  | ||||| |||||||| || ||||||||||||||||| || |  || |||||| | ||||||   |||     
T  4335271 ccaggtcatgtaatagaccagattatgtcttatttgccgattagggacgcggtgagaacaagtgttttgtcgaggaattggaggaaaaaatggtatacac 4335172  T
Q  101 tgccaaatcttgtattt 117  Q
    | |||||||||||||||    
T  4335171 ttccaaatcttgtattt 4335155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 6601835 - 6601779
Alignment:
Q  174 aattatcgaccatgtacttttactttattcttggccaatcaacaagttcaagctctc 230  Q
    |||||| || ||||||||||||||  ||||| |||||||||| ||||||||||||||    
T  6601835 aattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctc 6601779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 3340300 - 3340350
Alignment:
Q  21 gattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatc 71  Q
    |||||| ||||||||| |||||| |||||| || |||||||||||||||||    
T  3340300 gattctctcacacttgtcaattaaggaagcagtaagaacaagtgttttatc 3340350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 2948534 - 2948497
Alignment:
Q  184 catgtacttttactttattcttggccaatcaacaagtt 221  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  2948534 catgtacttttacttcattctgggccaatcaacaagtt 2948497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 3340472 - 3340509
Alignment:
Q  184 catgtacttttactttattcttggccaatcaacaagtt 221  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  3340472 catgtacttttacttcattctgggccaatcaacaagtt 3340509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 3349173 - 3349266
Alignment:
Q  20 agattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgccaaatcttgt 113  Q
    ||||||| ||||||||| |||||| |||| | || ||||||||||| ||||| | | |||||||| | |||||| ||||| | ||| |||||||    
T  3349173 agattctctcacacttgacaattaaggaatcagtaagaacaagtgtgttatcgagcgaatggaggaagaaatggtccacactaccagatcttgt 3349266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 4323180 - 4323139
Alignment:
Q  184 catgtacttttactttattcttggccaatcaacaagttcaag 225  Q
    ||||||||||||||| ||||| |||||||||||| |||||||    
T  4323180 catgtacttttacttcattctgggccaatcaacatgttcaag 4323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 4323372 - 4323236
Alignment:
Q  1 ccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaa 100  Q
    |||||| |||||| |||  ||||| ||||  ||||||| |||||||| || ||||||||||||||||| || |  || |||||| | ||||||   |||     
T  4323372 ccaggtcatgtaacagatcagattatgtcttacttgccgattagggacgcagtgagaacaagtgttttgtcgaggaattggaggaaaaaatggtatacac 4323273  T
Q  101 tgccaaatcttgtatttaataaacaatgtgtctctgc 137  Q
    | |||||||||||  || ||| ||||||||| |||||    
T  4323272 ttccaaatcttgtgcttgatagacaatgtgtgtctgc 4323236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 20934232 - 20934368
Alignment:
Q  1 ccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaa 100  Q
    |||||| ||||||||||| |||||||| |  ||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||  ||||     
T  20934232 ccaggtcatgtaatagaccagattctgacttacttgccaattagggaagcagtgagaacaagtgttttatctaaaaaatggaggaacaaatggtacacac 20934331  T
Q  101 tgccaaatcttgtatttaataaacaatgtgtctctgc 137  Q
    | ||||||||||| ||| ||| ||||||| |||||||    
T  20934332 tcccaaatcttgtgtttgatagacaatgtctctctgc 20934368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 39273828 - 39273957
Alignment:
Q  8 atgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgccaaa 107  Q
    ||||||||||  ||||||||||   |||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||  |||| | |||||    
T  39273828 atgtaatagatcagattctgtcttgcttgccaattagggaagcagtgagaacaagtgttttgtccagccaatggaggtacaaatggtacacactaccaaa 39273927  T
Q  108 tcttgtatttaataaacaatgtgtctctgc 137  Q
    |||||| ||| ||| ||  |||||||||||    
T  39273928 tcttgtgtttgatagacgttgtgtctctgc 39273957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 20952776 - 20952888
Alignment:
Q  1 ccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaa 100  Q
    |||||| ||||||||||  |||||||| |  |||||| ||||||||| || |||||||||||||||||||| |  ||||||||| ||||||||  ||||     
T  20952776 ccaggtcatgtaatagatcagattctgacttacttgcaaattagggatgcagtgagaacaagtgttttatctagaaaatggaggaacaaatggaacacac 20952875  T
Q  101 tgccaaatcttgt 113  Q
    | |||||||||||    
T  20952876 ttccaaatcttgt 20952888  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 20923438 - 20923492
Alignment:
Q  181 gaccatgtacttttactttattcttggccaatcaacaagttcaagctctctgatt 235  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  20923438 gaccatgtacttttacttcattctgggccaatcaacaagttcaagatctctgatt 20923492  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 20926881 - 20926984
Alignment:
Q  35 tgccaattagggaagctgtgagaacaagtgttttatc-caacaaatggaggtacaaatgggccacaatgccaaatcttgtatttaataaacaatgtgtct 133  Q
    |||||||||||||||| | ||||||||||||||||||  || ||||||||| ||||| ||  |||| | ||||||||||| ||| |||  ||||||||||    
T  20926881 tgccaattagggaagcagcgagaacaagtgttttatctaaaaaaatggaggaacaaagggtacacactaccaaatcttgtctttgatagtcaatgtgtct 20926980  T
Q  134 ctgc 137  Q
    ||||    
T  20926981 ctgc 20926984  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 20923271 - 20923385
Alignment:
Q  23 ttctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgccaaatcttgtatttaataa 122  Q
    |||| |||| |||| |||| | |||||| | |||||||||||||||||| |||||||||||| | |||||| |||||   ||  ||||||| ||  ||||    
T  20923271 ttctttcacgcttgtcaatcaaggaagcagggagaacaagtgttttatctaacaaatggaggaaaaaatggtccacacaaccggatcttgtgttcgataa 20923370  T
Q  123 acaatgtgtctctgc 137  Q
    ||||||||| |||||    
T  20923371 acaatgtgtatctgc 20923385  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 20952962 - 20953012
Alignment:
Q  184 catgtacttttactttattcttggccaatcaacaagttcaagctctctgat 234  Q
    ||||||||||||||| ||||| |||||||||||| ||||||| ||| ||||    
T  20952962 catgtacttttacttcattctgggccaatcaacatgttcaagttctatgat 20953012  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 21237307 - 21237442
Alignment:
Q  1 ccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaa 100  Q
    |||||| |||||| |||| ||||||| | |||||||||||||| ||||||  ||||||||||||| ||||||| |||||||||  ||||||||  ||| |    
T  21237307 ccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatggagaaacaaatggtacacta 21237406  T
Q  101 tgccaaatcttgtatttaataaacaatgtgtctctg 136  Q
    ||||||||||||| ||  ||||||| ||||||||||    
T  21237407 tgccaaatcttgtgttcgataaacattgtgtctctg 21237442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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