View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_11 (Length: 363)
Name: NF9925_low_11
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 31857780 - 31858117
Alignment:
| Q |
16 |
tatatgtcaaggatattcaagaagtccaaccagacagttattgttgtcaccaataatgtaccctctcagctccccaacgagctcttttcattcacagttt |
115 |
Q |
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| T |
31857780 |
tatatgtcaagtatattcaagaagtccaaccagacagttattgttgtcaccaataatgtaccctctcagctccccagcgagctcttttcattcacagttt |
31857879 |
T |
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| Q |
116 |
actatcaataccacttgatcaagatattattattct-acgagcttaagagtttactcgaaaaatcaatttaatataaattattgtagcttgagattctta |
214 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31857880 |
actgtcaataccacttgatcaagatattattattctcacgagcttaagagtttactcgaaaaatcaatttaatataaactattgtagcttgagattctta |
31857979 |
T |
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| Q |
215 |
cagaagcagtttgcttggtagaataaaacatgaataaagtaaagtgtttttatcatatcttgagttttactgctccaatcaagttgattcgtgtactctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31857980 |
cagaagcagtttgcttggtagaataaaacatgaataaagtaaagtgtttttatcatatcttgagttttactgctccaatcaagttgattcgtgtactctt |
31858079 |
T |
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| Q |
315 |
agaaagcttatggtattatctacaaccttcgtgttcat |
352 |
Q |
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| T |
31858080 |
ataaagcttatggtattatctacaaccttcgtgttcat |
31858117 |
T |
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