View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9925_low_13 (Length: 353)

Name: NF9925_low_13
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9925_low_13
NF9925_low_13
[»] chr3 (10 HSPs)
chr3 (1-143)||(45109468-45109612)
chr3 (151-325)||(44380249-44380425)
chr3 (179-303)||(39498692-39498817)
chr3 (184-320)||(33509708-33509846)
chr3 (150-318)||(17466267-17466437)
chr3 (179-320)||(37742748-37742891)
chr3 (203-318)||(35094595-35094712)
chr3 (148-255)||(50934492-50934600)
chr3 (157-300)||(47426351-47426496)
chr3 (158-223)||(32319469-32319534)
[»] chr2 (8 HSPs)
chr2 (147-320)||(34392086-34392261)
chr2 (157-318)||(4775635-4775799)
chr2 (150-320)||(37357922-37358098)
chr2 (187-316)||(23863812-23863943)
chr2 (179-320)||(7381715-7381857)
chr2 (233-325)||(4779663-4779756)
chr2 (207-320)||(25275627-25275741)
chr2 (262-320)||(21606147-21606205)
[»] chr6 (4 HSPs)
chr6 (163-320)||(32644843-32645000)
chr6 (149-320)||(1211849-1212022)
chr6 (180-320)||(5403881-5404023)
chr6 (277-320)||(10503264-10503307)
[»] chr5 (7 HSPs)
chr5 (179-320)||(19357267-19357409)
chr5 (179-320)||(1826282-1826425)
chr5 (179-320)||(33858543-33858686)
chr5 (149-320)||(11607539-11607712)
chr5 (179-320)||(33271637-33271780)
chr5 (176-288)||(39570080-39570194)
chr5 (156-197)||(11315151-11315192)
[»] chr4 (9 HSPs)
chr4 (157-317)||(22343338-22343500)
chr4 (179-320)||(12473727-12473870)
chr4 (179-320)||(12528136-12528279)
chr4 (151-302)||(33249397-33249550)
chr4 (150-311)||(21260788-21260951)
chr4 (157-320)||(35869576-35869741)
chr4 (150-325)||(51811908-51812085)
chr4 (252-325)||(1796648-1796721)
chr4 (151-232)||(34829178-34829259)
[»] scaffold0032 (1 HSPs)
scaffold0032 (150-318)||(34188-34356)
[»] chr8 (5 HSPs)
chr8 (151-320)||(41179568-41179739)
chr8 (157-320)||(24337835-24338000)
chr8 (179-317)||(18168408-18168549)
chr8 (179-317)||(18631965-18632106)
chr8 (253-318)||(11254035-11254100)
[»] chr1 (5 HSPs)
chr1 (151-318)||(32676131-32676300)
chr1 (179-305)||(8462151-8462279)
chr1 (238-321)||(46435469-46435553)
chr1 (157-318)||(29119331-29119494)
chr1 (157-320)||(2569038-2569202)
[»] scaffold0229 (1 HSPs)
scaffold0229 (149-320)||(13010-13184)
[»] scaffold0263 (1 HSPs)
scaffold0263 (186-262)||(23163-23240)
[»] chr7 (3 HSPs)
chr7 (157-320)||(48250155-48250322)
chr7 (200-320)||(48072431-48072553)
chr7 (233-320)||(32694575-32694663)
[»] scaffold0519 (1 HSPs)
scaffold0519 (253-318)||(11293-11358)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 45109612 - 45109468
Alignment:
Q  1 gaataaaattgtggtggcaaatggactactactggaatgactagataataataacaagatgataatataattagattagata--nnnnnnnnatctttct 98  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||          ||||||||    
T  45109612 gaataaaattgtggtggcaaatggactactactagaatgaatagataataataacaagatgataatataattagattagatattttttttttatctttct 45109513  T
Q  99 aagtaatagtatgatatgatgctctattgaaacctctatcccact 143  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  45109512 aagtaatagtatgatatgatgctctattggaacctctatcccact 45109468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 151 - 325
Target Start/End: Original strand, 44380249 - 44380425
Alignment:
Q  151 ggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaata 249  Q
    ||||| ||||| ||||| ||| || || |||||||||||| ||||| | ||||| |||||||||||||  ||||||| |||| |||| |||||||| |||    
T  44380249 ggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgata 44380348  T
Q  250 ta-ttttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagtcttat 325  Q
    || ||||||||| | |||||| | ||||||| |||||||| |||||||||||||| |||||||||||||||| ||||    
T  44380349 tacttttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtgttat 44380425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 39498817 - 39498692
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatattttttaaaagatgtgccgcatgaca 277  Q
    ||||| |||||||||||||  ||||| |||||||||||||   || |||||||| ||||| ||||||||||||| |||||||| |||||||| | |||||    
T  39498817 caatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatataatttttaaaggatgtgccacgtgaca 39498718  T
Q  278 caatctaattgaacaatggtatatac 303  Q
    || ||||||||| |||| ||||||||    
T  39498717 cattctaattgagcaatagtatatac 39498692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 33509708 - 33509846
Alignment:
Q  184 gtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatata-ttttttaaaagatgtgccgcatgacacaat 281  Q
    |||||||| |||| | |||||||||||| ||||||| ||||||| |||| | || |||||||| || || ||||||||| |||||||| |||| |||| |    
T  33509708 gtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtatttttttaaaggatgtgccacatggcacatt 33509807  T
Q  282 ctaattgaacaatggtatatactattatggtacacaagt 320  Q
    ||||||  |||||| ||||||| ||||| ||||||||||    
T  33509808 ctaattagacaatgatatataccattattgtacacaagt 33509846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 318
Target Start/End: Original strand, 17466267 - 17466437
Alignment:
Q  150 cggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaat 248  Q
    |||||| || || ||||| ||| | ||||||||||||||||| |||||  |||||||||||||||||||  ||| ||| |||| ||||  |||| || ||    
T  17466267 cggattccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgat 17466366  T
Q  249 ata-ttttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaa 318  Q
    ||| ||||||||| | | |||| | |  |||||||||| ||| ||||||||||||| |||| |||||||||    
T  17466367 atatttttttaaagggtatgccacgtaccacaatctaactgagcaatggtatataccattacggtacacaa 17466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 37742748 - 37742891
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattattttaa-aatactttatttaatatattttttaaaaga-tgtgccgcatgac 276  Q
    ||||||||||||| |||||  ||||||||| || ||||||| ||| |||  |||  ||| |||||||| ||||||||||| ||||| |||||| | || |    
T  37742748 caatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatatttttttaaagagtgtgccacgtggc 37742847  T
Q  277 acaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    ||| | ||||||  ||||||||||||| |||||| |||||||||    
T  37742848 acattataattgggcaatggtatataccattatgttacacaagt 37742891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 318
Target Start/End: Original strand, 35094595 - 35094712
Alignment:
Q  203 tagagtgtgtcacctacaaatattatttta-aaatactttatttaatatattttttaaaag-atgtgccgcatgacacaatctaattgaacaatggtata 300  Q
    |||||| || ||||||| ||| ||| |||| ||||| ||||||| ||||||||||| |||| ||||| | | ||||||| |||||||| |||||| || |    
T  35094595 tagagtatgccacctaccaatgttactttataaatattttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattggacaatgataca 35094694  T
Q  301 tactattatggtacacaa 318  Q
    ||| ||||||||||||||    
T  35094695 taccattatggtacacaa 35094712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 50934492 - 50934600
Alignment:
Q  148 tacggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttattta 246  Q
    |||||||||||||| ||||| ||| || || ||||||||||||  |||||| |||||||||||| ||| ||| ||| ||| |||| |||| | ||||||     
T  50934492 tacggatttcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttg 50934591  T
Q  247 atatatttt 255  Q
    |||||||||    
T  50934592 atatatttt 50934600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 300
Target Start/End: Original strand, 47426351 - 47426496
Alignment:
Q  157 cacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatata-ttt 254  Q
    ||||| ||||| ||| || || |||| |||||||  |||||| |||||||||||||||||||  ||| ||| |||| | || |||||||| ||||| |||    
T  47426351 cacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatatttt 47426450  T
Q  255 tttaaaagatgtgccgcatgacacaatctaattgaacaatggtata 300  Q
    |||||| | |||||| ||||  ||| ||||||||  ||||||||||    
T  47426451 tttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 32319534 - 32319469
Alignment:
Q  158 acttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaat 223  Q
    |||| ||||| ||| || || ||||||||||||  |||||| |||||||||||| |||||||||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaat 32319469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 320
Target Start/End: Complemental strand, 34392261 - 34392086
Alignment:
Q  147 atacggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttattt 245  Q
    ||||||||| ||||| ||||| |||||| || ||||||||||||  |||||| |||||||||||| ||||||| ||| ||| |||| |||| ||||||||    
T  34392261 atacggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttattt 34392162  T
Q  246 aatatattttttaaaaga-tgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
     ||||||||||| ||||  |||||| |||| ||||||||||||| |||||||||||||| ||||||||||||||||    
T  34392161 gatatatttttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagt 34392086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 318
Target Start/End: Original strand, 4775635 - 4775799
Alignment:
Q  157 cacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta--aaatactttatttaatatattt 254  Q
    ||||||||||| ||| || || ||||| |||||||||||||| ||||||| ||| ||| |||| ||| ||| ||||  || |  ||||||||||||||||    
T  4775635 cacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatattt 4775734  T
Q  255 tttaaaag-atgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaa 318  Q
    ||| |||| ||||||| |||| |||||| |||||| |||||||||||||| ||||||||||||||    
T  4775735 ttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaa 4775799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 37358098 - 37357922
Alignment:
Q  150 cggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaat 248  Q
    |||||| ||||| ||||  ||| || || ||||| ||||||  |||| |||||||||||||||||||||  ||| ||| |||| |||| |||||||||||    
T  37358098 cggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaat 37357999  T
Q  249 atatttttt-----aaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    || ||||||     |||  ||||||| | ||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  37357998 atttttttttttttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagt 37357922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 316
Target Start/End: Complemental strand, 23863943 - 23863812
Alignment:
Q  187 tatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatat-tttttaaaagatgtgccgcatgacacaatcta 284  Q
    |||||||||||  |||||||||||| ||||||| ||| ||| |||| |||| |||||||| |||||| |||||||| | |||||| |||| |||| ||||    
T  23863943 tatattattggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtgccacatggcacattcta 23863844  T
Q  285 attgaacaatggtatatactattatggtacac 316  Q
    |||| |||||| ||||||  ||||||||||||    
T  23863843 attggacaatgatatatatcattatggtacac 23863812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 7381715 - 7381857
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatattttttaaaagatgtgccgcatgaca 277  Q
    |||||||||||| ||||||| |||||||||||| || |||| ||| ||| |||| |||| |||||||| |||||||||||||| |||||| |   |||||    
T  7381715 caatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatatattttttaaaggatgtgtcatgtgaca 7381814  T
Q  278 caatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    || | ||||||  |||| |||||||| ||||| |||| |||||    
T  7381815 cattttaattgggcaatagtatataccattatagtacgcaagt 7381857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 4779663 - 4779756
Alignment:
Q  233 aaatactttatttaatatattttttaaaag-atgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagtcttat 325  Q
    ||||||||||||| ||||||||||| |||| ||||| | | ||||||| |||||||| |||||||||||||| |||||| ||||||||| ||||    
T  4779663 aaatactttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattggacaatggtatataccattatgatacacaagtgttat 4779756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 25275741 - 25275627
Alignment:
Q  207 gtgtgtcacctacaaatattattttaaaatactttatttaatata-ttttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatacta 305  Q
    ||||| ||||||  ||| ||| ||| ||||||||||||| ||||| ||||||||| |||||||| | ||| ||| |||||||| |||||| ||||||| |    
T  25275741 gtgtgccacctatcaatgttacttttaaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattggacaatgatatatacca 25275642  T
Q  306 ttatggtacacaagt 320  Q
    ||||| |||| ||||    
T  25275641 ttatgatacagaagt 25275627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 21606147 - 21606205
Alignment:
Q  262 gatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    |||||||| | ||||||| |||||||| |||||||||||||| |||||| |||| ||||    
T  21606147 gatgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagt 21606205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 320
Target Start/End: Complemental strand, 32645000 - 32644843
Alignment:
Q  163 tgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattattttaaaatactttatttaatata-ttttttaaaa 261  Q
    ||||| ||| ||||||| || |||||||| |||||| |||||  ||||||||||||||||| ||| |||||||||||||||||  |||| |||||||||     
T  32645000 tgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttactttaaaatactttatttgttatatttttttaaag 32644901  T
Q  262 gatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    | |||||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||||    
T  32644900 ggtgtgccacatgatacaatctaattgaacaatggtatataccattat-gtacacaagt 32644843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 320
Target Start/End: Complemental strand, 1212022 - 1211849
Alignment:
Q  149 acggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaa 247  Q
    ||||||||||||| ||||| ||| || || ||||||||||||  ||||||||||||| ||||| |||||   ||| ||| ||||   || |||||||| |    
T  1212022 acggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttga 1211923  T
Q  248 tata-ttttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    |||| ||||||||| | |||||| | || |||| |||||| |  ||||||||||||| ||||||||||||||||    
T  1211922 tatatttttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagt 1211849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 320
Target Start/End: Complemental strand, 5404023 - 5403881
Alignment:
Q  180 aatggtatatattattggctaattagagtgtgtcacctacaaatattattttaaa-atactttatttaatatattttttaaaagat-gtgccgcatgaca 277  Q
    ||||||||||||||||||  | ||||||| || ||||||| ||| ||| |||| | ||  ||||||| ||||||||||| ||||   ||  | |||||||    
T  5404023 aatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatatttttttaaagggcgtatcacatgaca 5403924  T
Q  278 caatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    || |||||||| |||||||||||||| ||||||||||||||||    
T  5403923 cattctaattggacaatggtatataccattatggtacacaagt 5403881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 320
Target Start/End: Complemental strand, 10503307 - 10503264
Alignment:
Q  277 acaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    |||||||||||| |||||||||||||| ||||||||||||||||    
T  10503307 acaatctaattggacaatggtatataccattatggtacacaagt 10503264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 19357409 - 19357267
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatattttttaaaagatgtgccgcatgaca 277  Q
    ||||||||||||  |||||| |||||||||||| ||||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||| || | |||||    
T  19357409 caatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatatattttttaaaggatgtcccacgtgaca 19357310  T
Q  278 caatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    || |||||||| |||||| ||||||| ||||||||||||||||    
T  19357309 cattctaattggacaatgatatataccattatggtacacaagt 19357267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 1826282 - 1826425
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatatta-ttttaaaatactttatttaatatattttttaaaag-atgtgccgcatgac 276  Q
    ||||||||||||  |||||  |||||||||||||||||||| ||||||| |||  | || |||||||| ||||||||||| |||| ||||||| |||| |    
T  1826282 caatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatatttttttaaagtatgtgccacatggc 1826381  T
Q  277 acaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    ||| | ||||||||||||| ||||||  |||||| |||||||||    
T  1826382 acattttaattgaacaatgatatatatcattatgatacacaagt 1826425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 33858686 - 33858543
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatata-ttttttaaaagatgtgccgcatgac 276  Q
    |||| |||||||| |||| | ||||| |||||| ||||||| ||| ||| |||| ||||  ||||||| ||||| ||||||||| | |||||| | ||||    
T  33858686 caatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatacttttttaaagggtgtgccacgtgac 33858587  T
Q  277 acaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    ||| ||||||||  ||||||||||||| ||||||||||||||||    
T  33858586 acattctaattgggcaatggtatataccattatggtacacaagt 33858543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 320
Target Start/End: Complemental strand, 11607712 - 11607539
Alignment:
Q  149 acggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaa 247  Q
    ||||||| ||||| | ||| ||| || || ||||||||||||  |||| | ||||| |||||| ||||||| ||||||| |||| ||||  ||||||| |    
T  11607712 acggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttga 11607613  T
Q  248 tata-ttttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    |||| ||||||||| | |||||| |  | |||| |||||||| |||||||||||||  ||||||||||||||||    
T  11607612 tatacttttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagt 11607539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 33271637 - 33271780
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatattttttaaaag-atgtgccgcatgac 276  Q
    ||||| ||||||| |||||| ||||||||||||||| |||  ||| ||| || | |||| |||||||| ||||||||||| |||| ||| ||| | || |    
T  33271637 caatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgccacgtggc 33271736  T
Q  277 acaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    ||| ||||||||  |||| |||||||| ||||||||||| ||||    
T  33271737 acattctaattgggcaatagtatataccattatggtacataagt 33271780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 39570194 - 39570080
Alignment:
Q  176 tatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatata-ttttttaaaagatgtgccgcat 273  Q
    |||||||||||||||  |||||| |||||||||||||||||||| ||| ||| |||| ||||  ||||||| ||||| ||||||||| | |||||| | |    
T  39570194 tatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatacttttttaaagggtgtgccacct 39570095  T
Q  274 gacacaatctaattg 288  Q
    |||| | ||||||||    
T  39570094 gacatattctaattg 39570080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 11315151 - 11315192
Alignment:
Q  156 tcacttatgtactattgagatatcaatggtatatattattgg 197  Q
    |||||||||||||||||||||| ||||| ||||||| |||||    
T  11315151 tcacttatgtactattgagataccaatgttatatatcattgg 11315192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 317
Target Start/End: Original strand, 22343338 - 22343500
Alignment:
Q  157 cacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatatt-t 254  Q
    ||||| ||||| ||| || |||||||||||||||| |||| | ||||||||||||||| |||  ||| ||| |||| |||| |||||||| ||||||| |    
T  22343338 cacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatattat 22343437  T
Q  255 tttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacaca 317  Q
    |||||| |||||||| ||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  22343438 tttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacaca 22343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 12473727 - 12473870
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattattttaaa-atactttatttaatatattttttaaaaga-tgtgccgcatgac 276  Q
    ||||||||||||  |||||| |||||||||||| ||||||| ||| ||| |||| | || |||||||| ||||||||||| ||||  |||| | ||||||    
T  12473727 caatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatatttttttaaagggtgtggcacatgac 12473826  T
Q  277 acaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    ||| ||||||||| ||||||||||||| ||||||||||||||||    
T  12473827 acattctaattgagcaatggtatataccattatggtacacaagt 12473870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 12528136 - 12528279
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattattttaaa-atactttatttaatatattttttaaaaga-tgtgccgcatgac 276  Q
    ||||||||||||  |||||| |||||||||||| ||||||| ||| ||| |||| | || |||||||| ||||||||||| ||||  |||| | ||||||    
T  12528136 caatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatatttttttaaagggtgtggcacatgac 12528235  T
Q  277 acaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    ||| ||||||||| ||||||||||||| ||||||||||||||||    
T  12528236 acattctaattgagcaatggtatataccattatggtacacaagt 12528279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 302
Target Start/End: Complemental strand, 33249550 - 33249397
Alignment:
Q  151 ggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaata 249  Q
    ||||||||||| ||||| ||| || ||  |||||||||||  |||||| |||||||||||||||||||| ||| ||| |||| |||| |||||||| |||    
T  33249550 ggatttcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgata 33249451  T
Q  250 tat-tttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatata 302  Q
    ||| |||||||| | |||||| |||| |||||||||||||| ||||| ||||||    
T  33249450 tatatttttaaagggtgtgccacatggcacaatctaattgagcaatgatatata 33249397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 311
Target Start/End: Original strand, 21260788 - 21260951
Alignment:
Q  150 cggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaat 248  Q
    |||||| ||||||| ||| ||| || || ||||| ||||||| |||||| |||||||||||||||||||| ||| ||| |||| ||||  ||||||| ||    
T  21260788 cggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgat 21260887  T
Q  249 ata-ttttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatgg 311  Q
    ||| ||||||||| | |||||| |||| |||| ||||||||   |||| ||||||| |||||||    
T  21260888 atatttttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatgg 21260951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 35869741 - 35869576
Alignment:
Q  157 cacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatata-ttt 254  Q
    ||||| ||||| ||| || || ||||||||||||  |||| | ||||| | |||| ||||||| ||| ||| | || ||||  ||||||| ||||| |||    
T  35869741 cacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatatacttt 35869642  T
Q  255 tttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    |||||| | |||||| | ||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  35869641 tttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagt 35869576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 325
Target Start/End: Original strand, 51811908 - 51812085
Alignment:
Q  150 cggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaat 248  Q
    |||||| ||||  ||||| ||| || |||||| | |||||||||||||| ||||||||| || ||||||| ||| ||| |||| ||||  ||| ||| ||    
T  51811908 cggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgat 51812007  T
Q  249 ata-ttttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagtcttat 325  Q
    ||| ||||||||| | ||||||   ||||||| |||||||| | |||||||||||| |||||| || |||||| ||||    
T  51812008 atatttttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtgttat 51812085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 1796648 - 1796721
Alignment:
Q  252 ttttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagtcttat 325  Q
    ||||||||| |||||| | | || |||||| |||||| |||||||||||||| |||||||||||||||| ||||    
T  1796648 ttttttaaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtgttat 1796721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 34829259 - 34829178
Alignment:
Q  151 ggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta 232  Q
    ||||||||||||||||||||| || || ||||| ||||||| | |||| ||||| |||||||||||||| ||| ||| ||||    
T  34829259 ggatttcacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttacttta 34829178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 150 - 318
Target Start/End: Original strand, 34188 - 34356
Alignment:
Q  150 cggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaat 248  Q
    |||||| ||||| ||||| ||| || || |||||||||||||||||||| |||||||||||| ||| ||| ||||||| |||| ||||| ||||||| ||    
T  34188 cggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgat 34287  T
Q  249 atattttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaa 318  Q
    |||||||||||| | |||| | | ||||||| |||||||| | |||| |||||||  |||||||||||||    
T  34288 atattttttaaagggtgtgtcacgtgacacattctaattggataatgttatatac-cttatggtacacaa 34356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 320
Target Start/End: Complemental strand, 41179739 - 41179568
Alignment:
Q  151 ggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaata 249  Q
    ||||| ||||| ||||| ||| || || ||||| ||||||| |||||| ||||| ||||||||||||||  || ||| |||| ||||  |||||||||||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaata 41179640  T
Q  250 tattttttaaaag-atgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    |||||||| || | ||||||| |||| |||| ||||||||  ||||||||||||| ||||||||||||||||    
T  41179639 tatttttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagt 41179568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 24338000 - 24337835
Alignment:
Q  157 cacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattattttaaa-atactttatttaatatat-tt 254  Q
    ||||| ||||||||| || || ||||||||||||  || ||  |||||||||||| || |||| ||| ||| |||| | || |||||||| |||||| ||    
T  24338000 cacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatatatt 24337901  T
Q  255 tttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    |||||| | |||||| |||  |||| |||||||| |||||||||||||| ||||||||||||||||    
T  24337900 tttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagt 24337835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 317
Target Start/End: Original strand, 18168408 - 18168549
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatatttttt--aaaagatgtgccgcatga 275  Q
    ||||||||||||| ||||   |||||||||||  ||||||| ||| ||| |||| ||||||||||||| |||||||||||  ||| |||||||| | |||    
T  18168408 caatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaaggatgtgccacgtga 18168507  T
Q  276 cacaatctaattgaacaatggtatatactattatggtacaca 317  Q
    ||||||||||||    |||  ||||||| |||||||||||||    
T  18168508 cacaatctaattaggtaataatatataccattatggtacaca 18168549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 317
Target Start/End: Original strand, 18631965 - 18632106
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatatttttt--aaaagatgtgccgcatga 275  Q
    ||||||||||||| ||||   |||||||||||  ||||||| ||| ||| |||| ||||||||||||| |||||||||||  ||| |||||||| | |||    
T  18631965 caatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaaggatgtgccacgtga 18632064  T
Q  276 cacaatctaattgaacaatggtatatactattatggtacaca 317  Q
    ||||||||||||    |||  ||||||| |||||||||||||    
T  18632065 cacaatctaattaggtaataatatataccattatggtacaca 18632106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 11254100 - 11254035
Alignment:
Q  253 tttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaa 318  Q
    |||||||| | |||||| | ||||||| ||||| ||| ||||||||||||| ||||||||||||||    
T  11254100 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaa 11254035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 318
Target Start/End: Original strand, 32676131 - 32676300
Alignment:
Q  151 ggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaata 249  Q
    ||||| ||||| ||||| ||| || || ||||||||||||  |||||| ||||||| ||   ||||||| ||| ||| |||| |||| |||||||| |||    
T  32676131 ggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgata 32676230  T
Q  250 tattttttaaaag-atgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaa 318  Q
    |||||||| |||| ||||||| |||| ||||||||||||| |||||||||||||| ||||| ||||||||    
T  32676231 tatttttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaa 32676300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 8462151 - 8462279
Alignment:
Q  179 caatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatata-ttttttaaaagatgtgccgcatgac 276  Q
    ||||||||||||| ||||   ||||| |||||| ||||||| ||| |||||||| ||||  ||||||||||||| ||||||||| |  ||||| | ||||    
T  8462151 caatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatatacttttttaaagggcgtgccacgtgac 8462250  T
Q  277 acaatctaattgaacaatggtatatacta 305  Q
    ||| | |||||| ||||||||||||||||    
T  8462251 acattttaattggacaatggtatatacta 8462279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 46435553 - 46435469
Alignment:
Q  238 ctttatttaatatat-tttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagtc 321  Q
    |||||||| |||||| |||||||| | |||| | ||||||||| ||||||||  ||||||||||||| |||||||||||||||||    
T  46435553 ctttatttgatatatatttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtc 46435469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 318
Target Start/End: Complemental strand, 29119494 - 29119331
Alignment:
Q  157 cacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattattttaaa-atactttatttaatatatttt 255  Q
    ||||| ||||| ||| || || ||||||||||||  |||||| |||||||||||| ||||||  | | ||| |||| | || |||||||| |||||||||    
T  29119494 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatatttt 29119395  T
Q  256 ttaaaaga-tgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaa 318  Q
    || ||||  |||||| |||| |||| ||||||||  |||| ||||||||  |||||||||||||    
T  29119394 tttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaa 29119331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 320
Target Start/End: Original strand, 2569038 - 2569202
Alignment:
Q  157 cacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatatttt 255  Q
    ||||| ||||| ||| || || ||||||||||||| ||| || |||||||||||| ||||||| ||| |||  |||  ||| |||||||| |||||||||    
T  2569038 cacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatatatttt 2569137  T
Q  256 ttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    ||||| | ||||||   || |||| |||||||   |||| |||||||  |||||| |||||||||    
T  2569138 ttaaagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagt 2569202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 320
Target Start/End: Complemental strand, 13184 - 13010
Alignment:
Q  149 acggatttcacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaa 247  Q
    ||||||||||||| ||||| ||| || || ||||||||||||  ||||||||||||| ||||| |||||   ||| ||| ||||   || |||||||| |    
T  13184 acggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttga 13085  T
Q  248 tatattttttaaaa--gatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    |||||||||| |||  | |||||| | || |||| |||||| |  ||||||||||||| ||||||||||||||||    
T  13084 tatatttttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagt 13010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 23240 - 23163
Alignment:
Q  186 atatattattggctaattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatattttttaaaag 262  Q
    |||||| |||||| |||||||||||| ||||||| ||| ||| |||| ||||| ||||||| ||||||||||||||||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatattttttaaaag 23163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 320
Target Start/End: Original strand, 48250155 - 48250322
Alignment:
Q  157 cacttatgtactattgagatatcaatggtatatattattggctaattagagtgtgtcacctacaaatattattttaaa-atactttatttaatatatttt 255  Q
    ||||| ||||| ||| || || ||||| ||||||| |||||  |||||||||||| ||||||| ||| ||| |||| | || |||||||| |||| ||||    
T  48250155 cacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatttttt 48250254  T
Q  256 ttaaaaga-tgtgccgcatga--cacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    || ||||  | |||  ||||   |||| |||||||| |||||||||||||| ||||||||||||||||    
T  48250255 tttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagt 48250322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 320
Target Start/End: Original strand, 48072431 - 48072553
Alignment:
Q  200 aattagagtgtgtcacctacaaatattatttta-aaatactttatttaatatattttttaaaaga-tgtgccgcatgacacaatctaattgaacaatggt 297  Q
    |||||||||||| ||| |   ||| |||||||| ||||| ||||||| || |||||||| ||||  |||||| | || |||| ||||||||  |||||||    
T  48072431 aattagagtgtgccacatttcaatgttattttataaatattttatttgatgtatttttttaaagggtgtgccacgtggcacattctaattgggcaatggt 48072530  T
Q  298 atatactattatggtacacaagt 320  Q
    |||||| ||||||||||||||||    
T  48072531 atataccattatggtacacaagt 48072553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 32694663 - 32694575
Alignment:
Q  233 aaatactttatttaatatattttttaaaaga-tgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaagt 320  Q
    |||| |||||||| ||||||||||| ||||  |||||| | ||||||| |||||||   ||||||||||||| ||||| ||||||||||    
T  32694663 aaattctttatttgatatatttttttaaagggtgtgccacgtgacacattctaattaggcaatggtatataccattatagtacacaagt 32694575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 11293 - 11358
Alignment:
Q  253 tttttaaaagatgtgccgcatgacacaatctaattgaacaatggtatatactattatggtacacaa 318  Q
    |||||||| | |||||| | ||||||| ||||| ||| ||||||||||||| ||||||||||||||    
T  11293 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaa 11358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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