View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9925_low_15 (Length: 318)

Name: NF9925_low_15
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9925_low_15
NF9925_low_15
[»] chr6 (5 HSPs)
chr6 (71-316)||(27120558-27120806)
chr6 (109-318)||(27120130-27120346)
chr6 (180-318)||(27118123-27118263)
chr6 (244-317)||(27118434-27118507)
chr6 (14-62)||(27120491-27120539)
[»] chr8 (7 HSPs)
chr8 (120-318)||(13028932-13029136)
chr8 (188-318)||(35091514-35091645)
chr8 (250-318)||(35091397-35091465)
chr8 (14-117)||(35091150-35091252)
chr8 (182-283)||(34971982-34972084)
chr8 (14-56)||(35091723-35091765)
chr8 (72-117)||(13029281-13029326)
[»] chr1 (6 HSPs)
chr1 (131-316)||(42154219-42154409)
chr1 (252-318)||(12855418-12855484)
chr1 (242-318)||(12855691-12855766)
chr1 (241-316)||(49447281-49447356)
chr1 (71-119)||(49447087-49447135)
chr1 (14-56)||(49447159-49447201)
[»] chr3 (1 HSPs)
chr3 (241-315)||(22506004-22506078)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 71 - 316
Target Start/End: Original strand, 27120558 - 27120806
Alignment:
Q  71 ttagggttggtgttagctagtggggttaagctttaataataagagatttaaggaataaaatctttatttctaaatttaagagttggagagtaggagaaaa 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||||    
T  27120558 ttagggttggtgttagctagtggggttaagctttaataataagagattcaaggaatacaatttttatttctaaatttaagagtcagagagtaggagaaaa 27120657  T
Q  171 cttcaaagcac---gcattaaacccaaatttggagtagtttcaaagctggagaaagatccattggcgttttgaagacataatgagtcaaggtgggaaaat 267  Q
    ||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  27120658 cttcaaagcattatgcattaaacccaaatttggagtagtttcaaagctggagaaagatccattggcgttttggagacataaagagtcaaggtgggaaaat 27120757  T
Q  268 ggaattgagtgggagagcaacattaaacgctttaaggttgatttaagag 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27120758 ggaattgagtgggagagcaacattaaacgctttaaggttgatttaagag 27120806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 109 - 318
Target Start/End: Original strand, 27120130 - 27120346
Alignment:
Q  109 ataagagatttaaggaataaaatctttatttctaaatttaagagttggagagtag---gagaaaacttcaaagcac---gcattaaacccaaatttggag 202  Q
    |||||||||| |||||| ||||||||| |||||||||||||||| | ||||| ||   ||||| ||| |||||||    ||||||||||||||||||||     
T  27120130 ataagagattgaaggaacaaaatctttgtttctaaatttaagagatagagagcagtgggagaagactgcaaagcattatgcattaaacccaaatttggat 27120229  T
Q  203 tagtttca-aagctggagaaagatccattggcgttttgaagacataatgagtcaaggtgggaaaatggaattgagtgggagagcaacattaaacgcttta 301  Q
    || ||||| |||| |||||||||| ||| | |  |||| |||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  27120230 taatttcataagccggagaaagattcatcgactctttggagacataaagagtcaaggtgggaaaatggatttgagtgggagaccaacattaaacacttta 27120329  T
Q  302 aggttgatttaagaggc 318  Q
    | |||||||||||||||    
T  27120330 atgttgatttaagaggc 27120346  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 318
Target Start/End: Original strand, 27118123 - 27118263
Alignment:
Q  180 acgcattaaacccaaatttggagtagtttca-aagctggagaaagatccattggcgttttgaagacataat-gagtcaaggtgggaaaatggaattgagt 277  Q
    |||||||||||| |||||||||||| ||||| |||||| |||||||||||||| |  |||| ||||||||  |||||||||  || |||| |||||||||    
T  27118123 acgcattaaacctaaatttggagtaatttcagaagctgaagaaagatccattgactctttggagacataaaagagtcaaggatggtaaatagaattgagt 27118222  T
Q  278 gggagagcaacattaaacgctttaaggttgatttaagaggc 318  Q
    | |||  ||||||||||||||||||  || |||||||||||    
T  27118223 gagaggccaacattaaacgctttaattttcatttaagaggc 27118263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 27118434 - 27118507
Alignment:
Q  244 cataatgagtcaaggtgggaaaatggaattgagtgggagagcaacattaaacgctttaaggttgatttaagagg 317  Q
    ||||| ||||||||| |||||||||||||||||||||||  || |||||||||||||||  || ||||||||||    
T  27118434 cataaagagtcaaggcgggaaaatggaattgagtgggaggccagcattaaacgctttaatattaatttaagagg 27118507  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 27120491 - 27120539
Alignment:
Q  14 agggaatgtgaaagtcaaatgtgagcatttaatgcgtggcaaaaagagg 62  Q
    |||||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  27120491 agggaatgtgaaagtcaaatgtgaacatttaatgcgtgtcaaaaggagg 27120539  T

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Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 318
Target Start/End: Original strand, 13028932 - 13029136
Alignment:
Q  120 aaggaataaaatcttta-tttctaaatttaagagttggag-agtaggagaaaacttcaaagcac---gcattaaacccaaatttggagtagtttca-aag 213  Q
    |||||| |||||||||  |||||||||||||||||  ||| ||| |||||| ||| ||||| |    ||||||||||||||||||||||| ||||| |||    
T  13028932 aaggaacaaaatcttttgtttctaaatttaagagtcagagtagtgggagaagactccaaagaattatgcattaaacccaaatttggagtaatttcagaag 13029031  T
Q  214 ctggagaaagatccattggcgttttgaagacataatgagtcaaggtgggaaaatggaattgagtgggagagcaacattaaacgctttaaggttgatttaa 313  Q
    |||||||||||||||| | |  |||  |||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  13029032 ctggagaaagatccatcgactctttagagacataaagagtcaaggtgggaaaatggaattgagtgggaggccaacattaaacgctttaatgttgatttaa 13029131  T
Q  314 gaggc 318  Q
    |||||    
T  13029132 gaggc 13029136  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 188 - 318
Target Start/End: Original strand, 35091514 - 35091645
Alignment:
Q  188 aacccaaatttggagtagtttca-aagctggagaaagatccattggcgttttgaagacataatgagtcaaggtgggaaaatggaattgagtgggagagca 286  Q
    ||||||||||||||||| ||||| ||||||||||||||||| ||| |  |||| |||||||| |||||||||||||||||||||||||||||||||  ||    
T  35091514 aacccaaatttggagtaatttcagaagctggagaaagatccgttgactctttggagacataaagagtcaaggtgggaaaatggaattgagtgggaggcca 35091613  T
Q  287 acattaaacgctttaaggttgatttaagaggc 318  Q
    ||||||||||||||||  |||| |||||||||    
T  35091614 acattaaacgctttaatattgacttaagaggc 35091645  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 35091465 - 35091397
Alignment:
Q  250 gagtcaaggtgggaaaatggaattgagtgggagagcaacattaaacgctttaaggttgatttaagaggc 318  Q
    ||||||||||||||||||||||||||||||||   |||||||||| ||||||| |||||||||||||||    
T  35091465 gagtcaaggtgggaaaatggaattgagtgggacgccaacattaaatgctttaatgttgatttaagaggc 35091397  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 35091252 - 35091150
Alignment:
Q  14 agggaatgtgaaagtcaaatgtgagcatttaatgcgtggcaaaaagaggnnnnnnnnttagggttggtgttagctagtggggttaagctttaataataag 113  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||  ||||        |||||||||| ||| ||||| ||||||||||||||||||||||    
T  35091252 agggaatgagaaggtcaaatgtgagcatttaatgcgcggcaaagggagggaaaaaa-ttagggttggggttggctagaggggttaagctttaataataag 35091154  T
Q  114 agat 117  Q
    ||||    
T  35091153 agat 35091150  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 34971982 - 34972084
Alignment:
Q  182 gcattaaacccaaatttggagtagtttca-aagctggagaaagatccattggcgttttgaagacataatgagtcaaggtgggaaaatggaattgagtggg 280  Q
    |||||||| | |||||| ||||| ||||| |||||| |||||||||||||| |  |||| || || || |||||||||||| ||||||||||||| ||||    
T  34971982 gcattaaatctaaatttagagtaatttcagaagctgaagaaagatccattgactctttgcaggcaaaaggagtcaaggtggaaaaatggaattgaatggg 34972081  T
Q  281 aga 283  Q
    |||    
T  34972082 aga 34972084  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 35091723 - 35091765
Alignment:
Q  14 agggaatgtgaaagtcaaatgtgagcatttaatgcgtggcaaa 56  Q
    |||||||| ||| | ||||||||||||||||||||||||||||    
T  35091723 agggaatgagaaggacaaatgtgagcatttaatgcgtggcaaa 35091765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 13029281 - 13029326
Alignment:
Q  72 tagggttggtgttagctagtggggttaagctttaataataagagat 117  Q
    ||||||| | ||||||||| ||| ||||||||||||||||||||||    
T  13029281 tagggttagggttagctagagggattaagctttaataataagagat 13029326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 131 - 316
Target Start/End: Original strand, 42154219 - 42154409
Alignment:
Q  131 tctttatttctaaatttaagagttggag-agtaggagaaaacttcaaagcac---gcattaaacccaaatttggagtagtttca-aagctggagaaagat 225  Q
    ||||| ||||||||||||||| |  ||| |||||||||| ||| || ||||    ||||||| |||| |||||||||| ||||| |||| ||||||||||    
T  42154219 tctttgtttctaaatttaagaatgagagcagtaggagaagactccatagcattatgcattaagcccagatttggagtaatttcataagcgggagaaagat 42154318  T
Q  226 ccattggcgttttgaagacataatgagtcaaggtgggaaaatggaattgagtgggagagcaacattaaacgctttaaggttgatttaagag 316  Q
    |||||| |  |||| ||| |||| |||||||||||| |||||||||||||||||||   ||  |||| ||||||||| |||||||||||||    
T  42154319 ccattgactctttggagatataaagagtcaaggtggaaaaatggaattgagtgggatgccagtattatacgctttaatgttgatttaagag 42154409  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 12855418 - 12855484
Alignment:
Q  252 gtcaaggtgggaaaatggaattgagtgggagagcaacattaaacgctttaaggttgatttaagaggc 318  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  12855418 gtcaaggtgagaaaatggaattgagtgggagaccaacattaaacgctttaatgttgatttaagaggc 12855484  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 12855691 - 12855766
Alignment:
Q  242 gacataatgagtcaaggtgggaaaatggaattgagtgggagagcaacattaaacgctttaaggttgatttaagaggc 318  Q
    |||||||| |||||| |||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||||||    
T  12855691 gacataat-agtcaatgtgggaaaatggaattgagtgggaggccaactttaaacgctttaatgttgatttaagaggc 12855766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 49447356 - 49447281
Alignment:
Q  241 agacataatgagtcaaggtgggaaaatggaattgagtgggagagcaacattaaacgctttaaggttgatttaagag 316  Q
    |||||||| |||||||||||| ||||||||||||||||||||  ||||||||||| ||| || |||||||||||||    
T  49447356 agacataaagagtcaaggtggaaaaatggaattgagtgggagcccaacattaaacacttaaatgttgatttaagag 49447281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 49447135 - 49447087
Alignment:
Q  71 ttagggttggtgttagctagtggggttaagctttaataataagagattt 119  Q
    |||| ||||| ||||||||| ||||||||| ||||||||||||||||||    
T  49447135 ttagagttggggttagctagaggggttaagatttaataataagagattt 49447087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 49447201 - 49447159
Alignment:
Q  14 agggaatgtgaaagtcaaatgtgagcatttaatgcgtggcaaa 56  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||    
T  49447201 agggaatgagaaagtcaaatttgagcatttaatgtgtggcaaa 49447159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 22506078 - 22506004
Alignment:
Q  241 agacataatgagtcaaggtgggaaaatggaattgagtgggagagcaacattaaacgctttaaggttgatttaaga 315  Q
    |||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||||||| ||||| ||||||    
T  22506078 agacataaagagtcaaggtgggaaaatgaaattgagcgggagcccaacattaaacgctttaatgttgaattaaga 22506004  T

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