View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_19 (Length: 307)
Name: NF9925_low_19
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 7063787 - 7064070
Alignment:
| Q |
14 |
caaattttacttaatataaaagagtgagtgttgaataaagtcgagtgattattgatatcactttcgatgttagtatagtataaatggttgattaggaaaa |
113 |
Q |
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| T |
7063787 |
caaattttacttaatataaaagagtgagtgttgaataaagtcgagtgattattgatatcactttcgatgttagtatagtataaatggttgattagggaaa |
7063886 |
T |
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| Q |
114 |
agacgtgagaacttacgggtgtagaaaatgctcgaaaagccaagctctcaaaacattgacagaacgatcaggcaagcctctttgtggtctccaagcctct |
213 |
Q |
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| T |
7063887 |
agacgtgagaacttacgggtgtagaaaatgctcgaaaagccaagctctcaaaacattgacagaacgatcaggcaagcctctttgtggtctccaagcttct |
7063986 |
T |
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| Q |
214 |
tgatccatcatacccatctggtgaaatgctctttgttgtcttaggctttgttcaagtaccttaagcctaggggtctcacctttg |
297 |
Q |
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| T |
7063987 |
tgatccatcatacccatctggtgaaatgctctttgttgtcttaggctttgttcaagtaccttaagcctaggggtctcacctttg |
7064070 |
T |
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Back To:
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Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 121 - 269
Target Start/End: Complemental strand, 33458195 - 33458047
Alignment:
| Q |
121 |
agaacttacgggtgtagaaaatgctcgaaaagccaagctctcaaaacattgacagaacgatcaggcaagcctctttgtggtctccaagcctcttgatcca |
220 |
Q |
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||||| ||||| || |||||||| || |||||||| |||||||||| |||||||| || |||||||| ||||| |||||||||||||| ||||| |||| |
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| T |
33458195 |
agaacgtacggatgaagaaaatgttcaaaaagccaggctctcaaaatgttgacagatcgttcaggcaaacctctctgtggtctccaagcttcttgttcca |
33458096 |
T |
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| Q |
221 |
tcatacccatctggtgaaatgctctttgttgtcttaggctttgttcaag |
269 |
Q |
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| T |
33458095 |
tcatccccatctgatgaaacgctctctgctgtcttaagctttgttcaag |
33458047 |
T |
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