View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_21 (Length: 303)
Name: NF9925_low_21
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 4105817 - 4105542
Alignment:
| Q |
12 |
gaacctgtgatcctgttggtgctagtacgaggttgttgctgttgttcatgtctttggcgctccaaacaatggtttgatcatgtatgttgttgtaccatat |
111 |
Q |
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| T |
4105817 |
gaacctgtgatcctgttggtgctagtacgaggttgttgctgttgttcatgtctttggcgctccaaacaatggtttgatcatgtatgttgttgtaccatat |
4105718 |
T |
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| Q |
112 |
tgcaagcatgaaaaagtttgttgtggtattccgaaatccgaaagcgaattcaccagaaggtgatagccatggattgttgttgttgttagtggtggagagt |
211 |
Q |
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| T |
4105717 |
tgcaagcatgaaaaagtttgttgtggtattccgaaatccgaaagcgaattcaccagaaggtgatagccatggattgttgttgttgttagtggtggagagt |
4105618 |
T |
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| Q |
212 |
cttgaacttggagaaacgtttccaaaggctaacataagttgaagaaaaagaatggtaattatgtaaagggtagagg |
287 |
Q |
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| T |
4105617 |
cttgaacttggagaaacgtttccaaaggctaatataagttgaagaaaaagaatggcaattatgtaaagggtagagg |
4105542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 4129007 - 4128737
Alignment:
| Q |
12 |
gaacctgtgatcctgttggtgctagtacgaggttgttgctgttgttcatgtctttggcgctccaaacaatggtttgatcatgtatgttgttgtaccatat |
111 |
Q |
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| T |
4129007 |
gaacttgtgatcctgtcggtgcttgtacgaggttgttg---ttgttcgtgtttttagcactccaaacaatggttttttcaggtatcttgttgtaccatat |
4128911 |
T |
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| Q |
112 |
tgcaagcatgaaaaagtttgttgtggta------ttccgaaatccgaaagcgaattcaccagaaggtgatagccatggattgttgttgttgttagtggtg |
205 |
Q |
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| T |
4128910 |
tgcaagcatgaagagatttgttgctgtaccaagttgttgaaacccgaaagcaaattcaccagaaggtgatagccatgaa------tttttgtttgtggta |
4128817 |
T |
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| Q |
206 |
gagagtcttgaacttggagaaacgtttccaaaggctaacataagttgaagaaaaagaatggtaattatgtaaagggtaga |
285 |
Q |
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|| ||| | |||||| ||| ||||||||||||| |||||| |||||||||||| |||||| ||||||||| | |||||| |
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| T |
4128816 |
gatagtgtagaacttcgagtaacgtttccaaagactaacaaaagttgaagaaatagaatgaaaattatgtataaggtaga |
4128737 |
T |
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