View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_23 (Length: 278)
Name: NF9925_low_23
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 33 - 260
Target Start/End: Original strand, 1801095 - 1801322
Alignment:
| Q |
33 |
cataggaaaaaagaggaagaagagaataatagtaaaaatagtaaggtaactttatctggtttattgaattttattgatggaatttggtctgcgtgtggag |
132 |
Q |
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| T |
1801095 |
cataggaaaaaagaggaagaagaaaataacagtaaaaatagtaaggtaactttatctggtttattgaattttattgatggaatttggtccgcgtgtggag |
1801194 |
T |
|
| Q |
133 |
gagagaggattataattttcacgacgaattttgtggagaaacttgatccagctcttattaggacaggaaggatggataaacatgttgagttatcttattg |
232 |
Q |
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| T |
1801195 |
gggagaggattataattttcacgacgaattttgtggagaaacttgatccagctcttattaggacaggaaggatggataaacacgttgagttatcttattg |
1801294 |
T |
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| Q |
233 |
ttgttttgaagcttttaaggttcttgtt |
260 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
1801295 |
ttgttttgaagcttttaaggttcttgtt |
1801322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 2842548 - 2842734
Alignment:
| Q |
72 |
agtaaggtaactttatctggtttattgaattttattgatggaatttggtctgcgtgtggaggagagaggattataattttcacgacgaattttgtggaga |
171 |
Q |
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|||||||||||| | || ||||| |||||||||||||||||||||||||| || |||||| ||||||||| ||||||||||| || ||||||||||| | |
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| T |
2842548 |
agtaaggtaactctttcgggtttgttgaattttattgatggaatttggtcagcatgtggatcagagaggatcataattttcacaactaattttgtggata |
2842647 |
T |
|
| Q |
172 |
aacttgatccagctcttattaggacaggaaggatggataaacatgttgagttatcttattgttgttttgaagcttttaaggttcttg |
258 |
Q |
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| T |
2842648 |
aacttgatcctgctcttataaggagaggaagaatggataagcatatagaaatgtcttattgtagctatcaagcttttaaggttcttg |
2842734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 2829142 - 2829281
Alignment:
| Q |
72 |
agtaaggtaactttatctggtttattgaattttattgatggaatttggtctgcgtgtggaggagagaggattataattttcacgacgaattttgtggaga |
171 |
Q |
| |
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|||| ||||||| | |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| | |
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| T |
2829142 |
agtatggtaactctttctggtttgttgaattttattgatgggatttggtctgcatgtggaggagagaggatcataattttcacaacaaattttgtggaca |
2829241 |
T |
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| Q |
172 |
aacttgatccagctcttattaggacaggaaggatggataa |
211 |
Q |
| |
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|||||||||| || || ||||||| |||||||||||||| |
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| T |
2829242 |
aacttgatcctgccctaattaggaggggaaggatggataa |
2829281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 2833072 - 2832886
Alignment:
| Q |
72 |
agtaaggtaactttatctggtttattgaattttattgatggaatttggtctgcgtgtggaggagagaggattataattttcacgacgaattttgtggaga |
171 |
Q |
| |
|
|||||||||||| | |||||||| |||||||| ||||||||||||||||| || |||||| ||||||||| ||||||||||| || ||||||||||| | |
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| T |
2833072 |
agtaaggtaactctttctggtttgttgaatttcattgatggaatttggtcagcatgtggatcagagaggataataattttcacaacaaattttgtggaca |
2832973 |
T |
|
| Q |
172 |
aacttgatccagctcttattaggacaggaaggatggataaacatgttgagttatcttattgttgttttgaagcttttaaggttcttg |
258 |
Q |
| |
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|||||||||| |||||||| |||| ||||| |||||||| ||| | || | ||||||||| | | | ||||||| |||||||||| |
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| T |
2832972 |
aacttgatcctgctcttataaggaggggaagaatggataagcatatagaaatgtcttattgtagctatcaagctttcaaggttcttg |
2832886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 14578259 - 14578391
Alignment:
| Q |
78 |
gtaactttatctggtttattgaattttattgatggaatttggtctgcgtgtggaggagagaggattataattttcacgacgaattttgtggagaaacttg |
177 |
Q |
| |
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|||||| | |||||||| ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||||| || || |||||||| ||||||| |
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| T |
14578259 |
gtaactctttctggtttgttgaattttatcgatggaatttggtcggcatgtggaggagaaaggatcataattttcacaaccaactttgtggataaacttg |
14578358 |
T |
|
| Q |
178 |
atccagctcttattaggacaggaaggatggata |
210 |
Q |
| |
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||| ||||||||||||| ||||||||||||| |
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| T |
14578359 |
atcatgctcttattaggaggggaaggatggata |
14578391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 2860333 - 2860194
Alignment:
| Q |
75 |
aaggtaactttatctggtttattgaattttattgatggaatttggtctgcgtgtggaggagagaggattataattttcacgacgaattttgtggagaaac |
174 |
Q |
| |
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||||||||| | || ||||| ||||||| |||||||||||||||||| | ||||||||||| |||| ||||||||||| || ||||||||||| |||| |
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| T |
2860333 |
aaggtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgtggacaaac |
2860234 |
T |
|
| Q |
175 |
ttgatccagctcttattaggacaggaaggatggataaaca |
214 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
2860233 |
ttgatcctgctctaattaggaggggaaggatggataaaca |
2860194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 2865703 - 2865579
Alignment:
| Q |
90 |
ggtttattgaattttattgatggaatttggtctgcgtgtggaggagagaggattataattttcacgacgaattttgtggagaaacttgatccagctctta |
189 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| | ||||||||||| |||| ||||||||||| || ||||||||||| ||||||||||| ||||| | |
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| T |
2865703 |
ggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgtggacaaacttgatcctgctctaa |
2865604 |
T |
|
| Q |
190 |
ttaggacaggaaggatggataaaca |
214 |
Q |
| |
|
|||||| ||||||||||||||||| |
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|
| T |
2865603 |
ttaggaggggaaggatggataaaca |
2865579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 2884893 - 2884769
Alignment:
| Q |
90 |
ggtttattgaattttattgatggaatttggtctgcgtgtggaggagagaggattataattttcacgacgaattttgtggagaaacttgatccagctctta |
189 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| | ||||||||||| |||| ||||||||||| || ||||||||||| ||||||||||| ||||| | |
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| T |
2884893 |
ggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgtggacaaacttgatcctgctctaa |
2884794 |
T |
|
| Q |
190 |
ttaggacaggaaggatggataaaca |
214 |
Q |
| |
|
|||||| ||||||||||||||||| |
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|
| T |
2884793 |
ttaggaggggaaggatggataaaca |
2884769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 2909760 - 2909641
Alignment:
| Q |
90 |
ggtttattgaattttattgatggaatttggtctgcgtgtggaggagagaggattataattttcacgacgaattttgtggagaaacttgatccagctctta |
189 |
Q |
| |
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||||| |||||||||||||||||||||||||| | ||||||||||| ||||| |||| |||||| || ||||||||||| ||||||||||| ||||||| |
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| T |
2909760 |
ggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataa-tttcacaactaattttgtggacaaacttgatcctgctctta |
2909662 |
T |
|
| Q |
190 |
ttaggacaggaaggatggata |
210 |
Q |
| |
|
| |||| ||||||||||||| |
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|
| T |
2909661 |
taaggaggggaaggatggata |
2909641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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