View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9925_low_24 (Length: 275)

Name: NF9925_low_24
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9925_low_24
NF9925_low_24
[»] chr2 (13 HSPs)
chr2 (115-267)||(8417766-8417915)
chr2 (18-118)||(8417955-8418055)
chr2 (18-118)||(8375079-8375179)
chr2 (18-118)||(8439924-8440024)
chr2 (147-256)||(8375338-8375444)
chr2 (147-256)||(8439659-8439765)
chr2 (148-267)||(8394788-8394904)
chr2 (148-267)||(8395031-8395147)
chr2 (148-267)||(8406425-8406541)
chr2 (148-267)||(8412545-8412661)
chr2 (148-267)||(8434643-8434759)
chr2 (115-149)||(8375227-8375261)
chr2 (115-149)||(8439842-8439876)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 115 - 267
Target Start/End: Complemental strand, 8417915 - 8417766
Alignment:
Q  115 taatggatccaaagatcaattagaaaggaataatatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgta 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| |||||    
T  8417915 taatggattcaaagatcaattagaaaggaataatatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaac---atttgtgaactacgta 8417819  T
Q  215 acaattggaacactcttctcttgaattccatcaacatgattattctctctgct 267  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  8417818 acaattggaacactcttctcttgaattccatcaacatgattactctcactgct 8417766  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 8418055 - 8417955
Alignment:
Q  18 aatacatggttagtatacaattctcagcagcagctaatttatgttcattgaggacagttaatgctgttatccatcttccaaaactcccaagtttgtctaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8418055 aatacatggttagtatacaattctcagcagcagctaatttatcttctttgaggacagttaatgctgttatccatcttccaaaactcccaagtttgtctaa 8417956  T
Q  118 t 118  Q
    |    
T  8417955 t 8417955  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 8375079 - 8375179
Alignment:
Q  18 aatacatggttagtatacaattctcagcagcagctaatttatgttcattgaggacagttaatgctgttatccatcttccaaaactcccaagtttgtctaa 117  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  8375079 aatacatggtttgtttacaaatctcagcagcagctaatttatgttctttgaggacagttaatgctgctatccatcttccaaaactaccaagtttgtctaa 8375178  T
Q  118 t 118  Q
    |    
T  8375179 t 8375179  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 8440024 - 8439924
Alignment:
Q  18 aatacatggttagtatacaattctcagcagcagctaatttatgttcattgaggacagttaatgctgttatccatcttccaaaactcccaagtttgtctaa 117  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  8440024 aatacatggtttgtttacaaatctcagcagcagctaatttatgttctttgaggacagttaatgctgctatccatcttccaaaactaccaagtttgtctaa 8439925  T
Q  118 t 118  Q
    |    
T  8439924 t 8439924  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 8375338 - 8375444
Alignment:
Q  147 atatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatc 246  Q
    ||||||| |||||||||  |||||||| ||| ||||||||||||| ||||||    | ||||| ||||||||||||||||||||||||||||| ||||||    
T  8375338 atatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattg---gcgaacagcgtaacaattggaacactcttctcttgaactccatc 8375434  T
Q  247 aacatgatta 256  Q
    ||||||||||    
T  8375435 aacatgatta 8375444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 8439765 - 8439659
Alignment:
Q  147 atatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatc 246  Q
    ||||||| |||||||||  |||||||| ||| ||||||||||||| ||||||    | ||||| |||| |||||||||||||||||||||||| ||||||    
T  8439765 atatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattg---gcgaacagcgtagcaattggaacactcttctcttgaactccatc 8439669  T
Q  247 aacatgatta 256  Q
    ||||||||||    
T  8439668 aacatgatta 8439659  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 8394788 - 8394904
Alignment:
Q  148 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatca 247  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||    | |||||||||||||| ||||| | |||||| || || || || |    
T  8394788 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattg---gcgaacaacgtaacaactggaataatcttctattaaactcaataa 8394884  T
Q  248 acatgattattctctctgct 267  Q
    | ||||||| |||| |||||    
T  8394885 atatgattactctcactgct 8394904  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 8395031 - 8395147
Alignment:
Q  148 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatca 247  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||    | |||||||||||||| ||||| | |||||| || || || || |    
T  8395031 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattg---gcgaacaacgtaacaactggaataatcttctattaaactcaataa 8395127  T
Q  248 acatgattattctctctgct 267  Q
    | ||||||| |||| |||||    
T  8395128 aaatgattactctcactgct 8395147  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 8406541 - 8406425
Alignment:
Q  148 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatca 247  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||    | |||||||||||||| ||||| | |||||| || || || || |    
T  8406541 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattg---gcgaacaacgtaacaactggaataatcttctattaaactcaataa 8406445  T
Q  248 acatgattattctctctgct 267  Q
    | ||||||| |||| |||||    
T  8406444 atatgattactctcactgct 8406425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 8412661 - 8412545
Alignment:
Q  148 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatca 247  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||    | |||||||||||||| ||||| | |||||| || || || || |    
T  8412661 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattg---gcgaacaacgtaacaactggaataatcttctattaaactcaataa 8412565  T
Q  248 acatgattattctctctgct 267  Q
    | ||||||| |||| |||||    
T  8412564 atatgattactctcactgct 8412545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 8434759 - 8434643
Alignment:
Q  148 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatca 247  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||    | |||||||||||||| ||||| | |||||| || || || || |    
T  8434759 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattg---gcgaacaacgtaacaactggaataatcttctattaaactcaataa 8434663  T
Q  248 acatgattattctctctgct 267  Q
    | ||||||| |||| |||||    
T  8434662 atatgattactctcactgct 8434643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 8375227 - 8375261
Alignment:
Q  115 taatggatccaaagatcaattagaaaggaataata 149  Q
    ||||||||||||||||||| |||||||||||||||    
T  8375227 taatggatccaaagatcaaatagaaaggaataata 8375261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 8439876 - 8439842
Alignment:
Q  115 taatggatccaaagatcaattagaaaggaataata 149  Q
    ||||||||||||||||||| |||||||||||||||    
T  8439876 taatggatccaaagatcaaatagaaaggaataata 8439842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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