View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9925_low_28 (Length: 251)

Name: NF9925_low_28
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9925_low_28
NF9925_low_28
[»] chr4 (6 HSPs)
chr4 (19-181)||(12117953-12118114)
chr4 (17-178)||(12115286-12115447)
chr4 (17-181)||(1526849-1527012)
chr4 (186-225)||(6391468-6391507)
chr4 (31-82)||(1488906-1488957)
chr4 (35-82)||(12121002-12121049)
[»] chr2 (2 HSPs)
chr2 (24-172)||(13642340-13642488)
chr2 (24-172)||(13641922-13642067)
[»] chr5 (1 HSPs)
chr5 (20-74)||(32268762-32268816)
[»] chr7 (1 HSPs)
chr7 (21-74)||(15091368-15091421)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 12118114 - 12117953
Alignment:
Q  19 gagactgtgagagaaaatcgaagacggttagtgatagagaggaactgttttgagacagcagagagaggttcaaggtagtggtggctgtcgtggatgagaa 118  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||    
T  12118114 gagattgtgagagaaaatcgaagacggttagtcatagagaggaactgttttgagacagcagaga-aggttcaacgtagtggtggttgtcgtggatgagaa 12118016  T
Q  119 atttgaatatcaattcccaacactcgtctggaaattgtgaatctgcgattgtttctatgggag 181  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||  ||||| ||||||    
T  12118015 atttgaatatctattcccaacactcgtctggaaattgtaaatctgcgatattttctgtgggag 12117953  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 12115447 - 12115286
Alignment:
Q  17 cagagactgtgagagaaaatcgaagacggttagtgatagagaggaactgttttgagacagcagagagaggttcaaggtagtggtggctgtcgtggatgag 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||||  ||||||    
T  12115447 cagagattgtgagagaaaatcgaagacggttagtgatagagaggaactattttgagacagcagagagaggttcaaggtattggttgttgtcgcagatgag 12115348  T
Q  117 aaatttgaatatcaattcccaacactcgtctggaaattgtgaatctgcgattgtttctatgg 178  Q
    |||||| |||||  ||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  12115347 aaattttaatattgattcccaacactcgtttggtaattgtaaatctgcgattgtttctatgg 12115286  T

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Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 1527012 - 1526849
Alignment:
Q  17 cagagactgtgagagaaaatcgaagacggttagtgatagagaggaactgttttgagacagcagagagaggttcaaggtagtggtggctgtcgtggatgag 116  Q
    |||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||    
T  1527012 cagagattgtgaaagaaaatcgaagaaggttagtgatagagagaaactgttttgaga-agcagagagaggttcaaggtagcggtggttgtcgtcgatgag 1526914  T
Q  117 aaatttgaatatcaattcccaacactcgtctggaaattgtgaatctgcgattgtttctatgggag 181  Q
     |||||||||||| |||||||||||||| |||| |||||| |||| |||||||||||| ||||||    
T  1526913 taatttgaatatcgattcccaacactcgactggtaattgtaaatcggcgattgtttctgtgggag 1526849  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 6391507 - 6391468
Alignment:
Q  186 tgtctgtctaaaagctagtataaataataattatttatag 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6391507 tgtctgtctaaaagctagtataaataataattatttatag 6391468  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 1488957 - 1488906
Alignment:
Q  31 gaaaatcgaagacggttagtgatagagaggaactgttttgagacagcagaga 82  Q
    |||||||||||| |||| ||||| ||||||||||| |||||||| |||||||    
T  1488957 gaaaatcgaagatggttggtgatggagaggaactgctttgagacggcagaga 1488906  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 12121049 - 12121002
Alignment:
Q  35 atcgaagacggttagtgatagagaggaactgttttgagacagcagaga 82  Q
    ||||||||||||| ||||| ||||||||||| |||||||| |||||||    
T  12121049 atcgaagacggttggtgatggagaggaactgctttgagacggcagaga 12121002  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 13642488 - 13642340
Alignment:
Q  24 tgtgagagaaaatcgaagacggttagtgatagagaggaactgttttgagacagcagagagaggttcaaggtagtggtggctgtcgtggatgagaaatttg 123  Q
    |||||||| ||||| |||||| |||||||||||||||||||  || ||||||||||||||||| ||||||||| | ||| ||||||||| ||||||||||    
T  13642488 tgtgagaggaaatcaaagacgtttagtgatagagaggaacttcttggagacagcagagagaggctcaaggtagcgttggttgtcgtggaagagaaatttg 13642389  T
Q  124 aatatcaattcccaacactcgtctggaaattgtgaatctgcgattgttt 172  Q
    || ||| |||||||||| | |||||| || ||| ||| || ||||||||    
T  13642388 aagatcgattcccaacatttgtctggtaaatgtaaatttgtgattgttt 13642340  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 13641922 - 13642067
Alignment:
Q  24 tgtgagagaaaatcgaagacggttagtgatagagaggaactgttttgagacagcagagagaggttcaaggtagtggtggctgtcgtggatgagaaatttg 123  Q
    ||||||||||||||||| | |||||||||||||||| ||||  || ||||||  ||||||||| ||||||||| | |   ||||||||||||||||||||    
T  13641922 tgtgagagaaaatcgaacatggttagtgatagagagaaacttcttggagacaaaagagagaggctcaaggtagcgct---tgtcgtggatgagaaatttg 13642018  T
Q  124 aatatcaattcccaacactcgtctggaaattgtgaatctgcgattgttt 172  Q
    || | | |||||||||||||| |||| || ||| |||||||||||||||    
T  13642019 aagaccgattcccaacactcgactggtaaatgtaaatctgcgattgttt 13642067  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 32268762 - 32268816
Alignment:
Q  20 agactgtgagagaaaatcgaagacggttagtgatagagaggaactgttttgagac 74  Q
    ||||||||||||| |||||||||||||| ||||| ||||| |||||||| |||||    
T  32268762 agactgtgagagagaatcgaagacggttggtgatggagagtaactgtttggagac 32268816  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 15091421 - 15091368
Alignment:
Q  21 gactgtgagagaaaatcgaagacggttagtgatagagaggaactgttttgagac 74  Q
    |||| ||||||||||| |||||| ||| ||||| |||||||||||||| |||||    
T  15091421 gactctgagagaaaatagaagactgttggtgatggagaggaactgtttggagac 15091368  T

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