View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9925_low_3 (Length: 504)
Name: NF9925_low_3
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 45675618 - 45676108
Alignment:
| Q |
1 |
gctcaacttcaatcatctgttctatgagttaaaagtggtgttatttgaacaaaaataaattgacaaccgtattcaatatcgtataaaaatatatgactta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45675618 |
gctcaacttcaatcatctgttctatgagttaaaagtggtgttatttgaacaaaaataaattgacaaccgtattcaatatcgtataaaaatatatgactta |
45675717 |
T |
|
| Q |
101 |
tcattgttgatatactatacaagaacaacaattaagttttattccactaaatagagtcaactaattgttgatgaaactttgagagagatgaatggcattt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45675718 |
tcattgttgatatactatacaa---caacaatcaaattttattccactaaatagagtcagataattgttgatgaaactttgagagagatgaatggtattt |
45675814 |
T |
|
| Q |
201 |
tttatcaactttggatagattttaacatgttggaatttttcagactcaattcatgcttgatcaactcaatgatcttcactatcgggtatgtgtttatttc |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45675815 |
ttgatcaactttggatagattttaacatgttggaatttttcagactcaattcatgcttgatcaactcaatgatcttcactatcgggtatgtgtttatttc |
45675914 |
T |
|
| Q |
301 |
tgtagtgaaaagtgttagcaacacacgttttaacatacatttttcaatacacgctctttaatcgggttgtctgtcccataaaaattatatgagtttcaca |
400 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45675915 |
tgttgtgaaaagtgttagcaacacacgttttaacatatatttttcaatacacgctctttaatcgggttgtctgtcccataaaaattatatgagttccaca |
45676014 |
T |
|
| Q |
401 |
taaatttgatgaaactcacgtaaattttaataaatagaaggagtgtcgaaaattgtgtaaaagaatgtgttgctaccaatattcttcttctttt |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45676015 |
taaatttgatgaaactcacgtaaattttaataaatagaaggagtgtcgaaaattgtgtaaaagaatgtgttgctaccaatattcttcttctttt |
45676108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 40694768 - 40694732
Alignment:
| Q |
316 |
tagcaacacacgttttaacatacatttttcaatacac |
352 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
40694768 |
tagcaacacacgttttaacacacacttttcaatacac |
40694732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 6705078 - 6705042
Alignment:
| Q |
118 |
tacaagaacaacaattaagttttattccactaaatag |
154 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
6705078 |
tacaagaacaacaatcaagttttattccattaaatag |
6705042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 12703456 - 12703492
Alignment:
| Q |
316 |
tagcaacacacgttttaacatacatttttcaatacac |
352 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
12703456 |
tagcaacacacattttaacacacatttttcaatacac |
12703492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University