View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_30 (Length: 250)
Name: NF9925_low_30
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12118258 - 12118497
Alignment:
| Q |
1 |
tctcgaaccaatccaccattcccgcagagtggttacgaattttgtccaaatatattacaactgtgacctctctcacattttccaatattgattttcttcg |
100 |
Q |
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| T |
12118258 |
tctccaaccaatccactattcccacagaggggttacgagttttgtccaaatacattacaactgtgacatctctcacattttccaacattgattttcttca |
12118357 |
T |
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| Q |
101 |
tagaaacgacatggttatgatatcgaattgtttccctttccttgaagaacttgaccttagtaacccaaaaaatgatggcaattttgcagcaaacgctatg |
200 |
Q |
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| T |
12118358 |
taaaaatgacatggttatgatattgatttgtttccctttccttgaagaacttgatcatagtaaccctaaaaataatggcaattttgcagcaaactctatg |
12118457 |
T |
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| Q |
201 |
cttttggagcttcctaagctccgcagggttaatctctctg |
240 |
Q |
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| T |
12118458 |
cttttggagcttcctaagctccgtagggttaatctctctg |
12118497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 1527173 - 1527393
Alignment:
| Q |
18 |
attcccgcagagtggttacgaattttgtccaaatatattacaactgtgacctctctcacattttccaatattgattttcttcgtagaaacgacatggtta |
117 |
Q |
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| T |
1527173 |
attcccgcagaggggttacgagttttgtccaaatatattacaactgtgacctct--cacattttccaattttcattttatacgaaaaaagaacatggtta |
1527270 |
T |
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| Q |
118 |
tgatatcgaattgtttccctttccttgaagaacttgaccttagtaacccaaaaaatgatggcaattttgcagcaaacgctatgcttttggagcttcctaa |
217 |
Q |
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| T |
1527271 |
tgatatcgaattgtttcccttcccttgaagaacttgaccttagtaaccctaaaaaagatggaaattttgctgcaaaagctatgcttttggagcttcctaa |
1527370 |
T |
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| Q |
218 |
gctccgcagggttaatctctctg |
240 |
Q |
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| T |
1527371 |
gctccacaaggttaatctctctg |
1527393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 12116163 - 12116282
Alignment:
| Q |
8 |
ccaatccaccattcccgcagagtggttacgaattttgtccaaatatattacaactgtgacctctctcacattttccaatattgattttcttcgtagaaac |
107 |
Q |
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|||||||||||||||||||||| |||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| || | || |
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| T |
12116163 |
ccaatccaccattcccgcagaggggttacgagttttttcgaaatatattacaaccgtgacctctctcacattttccaatattgattttcttcataaatac |
12116262 |
T |
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| Q |
108 |
gacatggttatgatatcgaa |
127 |
Q |
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| T |
12116263 |
gacatgtttatgatatcgaa |
12116282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 548043 - 547932
Alignment:
| Q |
55 |
ttacaactgtgacctctctcacattttccaatattgattttcttcgtagaaacgacatggttatgatatcgaattgtttccctttccttgaagaacttga |
154 |
Q |
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| T |
548043 |
ttacaactttgaactctctcacttgttccaacattgattctctctgtaacaacgacctggtttgtatatctggttgcttccctttccttgaagaacttga |
547944 |
T |
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| Q |
155 |
ccttagtaaccc |
166 |
Q |
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||| |||||||| |
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| T |
547943 |
cctcagtaaccc |
547932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 641964 - 641924
Alignment:
| Q |
126 |
aattgtttccctttccttgaagaacttgaccttagtaaccc |
166 |
Q |
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| T |
641964 |
aattgtttccctttactcgaagaacttgacctcagtaaccc |
641924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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