View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9925_low_31 (Length: 249)

Name: NF9925_low_31
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9925_low_31
NF9925_low_31
[»] chr5 (3 HSPs)
chr5 (1-239)||(14295563-14295801)
chr5 (6-37)||(26516469-26516500)
chr5 (6-38)||(13604825-13604857)
[»] chr8 (3 HSPs)
chr8 (129-217)||(29137600-29137688)
chr8 (1-39)||(30259171-30259209)
chr8 (1-37)||(29168642-29168678)
[»] chr4 (3 HSPs)
chr4 (11-49)||(4071945-4071983)
chr4 (1-50)||(2996630-2996679)
chr4 (13-49)||(25904187-25904223)
[»] chr1 (3 HSPs)
chr1 (1-50)||(44422756-44422805)
chr1 (12-47)||(5591933-5591968)
chr1 (14-49)||(43371856-43371891)
[»] chr6 (1 HSPs)
chr6 (12-48)||(32171349-32171385)
[»] chr2 (1 HSPs)
chr2 (1-45)||(1494415-1494459)
[»] chr7 (2 HSPs)
chr7 (8-49)||(12242308-12242349)
chr7 (1-49)||(33894684-33894732)
[»] chr3 (2 HSPs)
chr3 (12-49)||(25182952-25182989)
chr3 (12-49)||(40880913-40880950)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14295563 - 14295801
Alignment:
Q  1 ttatcgacatatcataagctgttttcataagctctctcagacagtctcaacattgtatgcaatttgtttgtatgttgatgaggttattcaaatatcttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14295563 ttatcgacatatcataagctgttttcataagctctctcagacagtctcaacattgtatgcaatttgtttgtatgttgatgaggttattcaaatatcttat 14295662  T
Q  101 ttaggtgagggatagcatgcgctttgtcgaagtagtcttggtggaaccagttaagcaagttgttgctttagcagatgcatatttcttccctcctttccag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14295663 ttaggtgagggatagcatgcgctttgtcgaagtagtcttggtggaaccagttaagcaagttgttgctttagcagatgcatatttcttccctcctttccag 14295762  T
Q  201 ccatcgttgctcccgaggacgaaaggaggaggacctttg 239  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14295763 ccatcgttgctcccgaggaccaaaggaggaggacctttg 14295801  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 26516469 - 26516500
Alignment:
Q  6 gacatatcataagctgttttcataagctctct 37  Q
    ||||||||||||||||||||||||||||||||    
T  26516469 gacatatcataagctgttttcataagctctct 26516500  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 13604857 - 13604825
Alignment:
Q  6 gacatatcataagctgttttcataagctctctc 38  Q
    ||||| |||||||||||||||||||||||||||    
T  13604857 gacatgtcataagctgttttcataagctctctc 13604825  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 29137600 - 29137688
Alignment:
Q  129 gaagtagtcttggtggaaccagttaagcaagttgttgctttagcagatgcatatttcttccctcctttccagccatcgttgctcccgag 217  Q
    ||||||| |||||| |||||||  |||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  29137600 gaagtaggcttggtagaaccagaaaagcaagtagttgcgttagcagatgcgtacttcttccctcctttccagccctcgttgctcccgag 29137688  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30259171 - 30259209
Alignment:
Q  1 ttatcgacatatcataagctgttttcataagctctctca 39  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  30259171 ttatagacatatcataagctgtttccataagctctctca 30259209  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29168678 - 29168642
Alignment:
Q  1 ttatcgacatatcataagctgttttcataagctctct 37  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  29168678 ttatggacatgtcataagctgttttcataagctctct 29168642  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 4071945 - 4071983
Alignment:
Q  11 atcataagctgttttcataagctctctcagacagtctca 49  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  4071945 atcataagctgttttcataagctctctcaaacagtctca 4071983  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2996630 - 2996679
Alignment:
Q  1 ttatcgacatatcataagctgttttcataagctctctcagacagtctcaa 50  Q
    |||| ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  2996630 ttatggacatgtcataagttgttttcataagctctctcaaacagtctcaa 2996679  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 25904223 - 25904187
Alignment:
Q  13 cataagctgttttcataagctctctcagacagtctca 49  Q
    |||||||||||||||||||||||| || |||||||||    
T  25904223 cataagctgttttcataagctctcccaaacagtctca 25904187  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44422756 - 44422805
Alignment:
Q  1 ttatcgacatatcataagctgttttcataagctctctcagacagtctcaa 50  Q
    |||| ||||| ||||||||| ||||||||||||||| |||||||||||||    
T  44422756 ttatggacatgtcataagctattttcataagctctcccagacagtctcaa 44422805  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 5591968 - 5591933
Alignment:
Q  12 tcataagctgttttcataagctctctcagacagtct 47  Q
    |||||||||||||||||||||||||||| |||||||    
T  5591968 tcataagctgttttcataagctctctcaaacagtct 5591933  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 43371891 - 43371856
Alignment:
Q  14 ataagctgttttcataagctctctcagacagtctca 49  Q
    |||||||||||||||||||||||||| |||||||||    
T  43371891 ataagctgttttcataagctctctcaaacagtctca 43371856  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 32171385 - 32171349
Alignment:
Q  12 tcataagctgttttcataagctctctcagacagtctc 48  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32171385 tcataagctgttttcataagctctctcaaacagtctc 32171349  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1494459 - 1494415
Alignment:
Q  1 ttatcgacatatcataagctgttttcataagctctctcagacagt 45  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||    
T  1494459 ttatggacatgtcataagctgttttcataagctctctcaaacagt 1494415  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 12242308 - 12242349
Alignment:
Q  8 catatcataagctgttttcataagctctctcagacagtctca 49  Q
    |||||||||||| |||| |||||||||||||| |||||||||    
T  12242308 catatcataagccgtttgcataagctctctcaaacagtctca 12242349  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33894684 - 33894732
Alignment:
Q  1 ttatcgacatatcataagctgttttcataagctctctcagacagtctca 49  Q
    |||| ||||| ||||| ||||||||||||||||||| || |||||||||    
T  33894684 ttatggacatgtcatatgctgttttcataagctctcacaaacagtctca 33894732  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 25182989 - 25182952
Alignment:
Q  12 tcataagctgttttcataagctctctcagacagtctca 49  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  25182989 tcataagttgttttcataagctctctcaaacagtctca 25182952  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 40880950 - 40880913
Alignment:
Q  12 tcataagctgttttcataagctctctcagacagtctca 49  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  40880950 tcataagttgttttcataagctctctcaaacagtctca 40880913  T

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