View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_34 (Length: 241)
Name: NF9925_low_34
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_34 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 31172353 - 31172129
Alignment:
| Q |
17 |
catagggaggggtaagttgtctccaaaaacgtccgatttaggacgactgagtaagcatataggaccatcccccataactactatactggatagggagatg |
116 |
Q |
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| T |
31172353 |
catagggaggggtaagttgtctccaaaaacgtccgatttaggacgactgagtaagcatataggaccatcccccataactactatactggatagggagatg |
31172254 |
T |
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| Q |
117 |
gggattaaccaagtaagagctaccgtccataattatgggcttgctccttccagttccacacatggtgtgacacgcgtttacccttcgtacctgacctaat |
216 |
Q |
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| T |
31172253 |
gggattaaccaagtaagagccaccgtccataattatgggcttgctccttccagttccacacatggtgtgacacgcgtttacccttcgtacctgacctaat |
31172154 |
T |
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| Q |
217 |
cattgctaatcatgagtgaatatcc |
241 |
Q |
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| T |
31172153 |
cattgctaatcacgagtgaatatcc |
31172129 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 29767780 - 29767824
Alignment:
| Q |
197 |
cccttcgtacctgacctaatcattgctaatcatgagtgaatatcc |
241 |
Q |
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| T |
29767780 |
cccttcgtaccgcacctaatcatttctaatcatgagggaatatcc |
29767824 |
T |
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