View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_39 (Length: 231)
Name: NF9925_low_39
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 36527094 - 36526896
Alignment:
| Q |
19 |
ttcatacggtacaaaagataaaagtatttatagacatcatctcttacttgaataacaagtaagccaaccaactcataacaaactagttagttactaacta |
118 |
Q |
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| T |
36527094 |
ttcatacggtacaaaagataaaagtatttatagacatcatctcttacttgaataacaagtaagctaaccaactcataacaaactagttagttactaacta |
36526995 |
T |
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| Q |
119 |
actctacctctaactactcgatagttgaattataaccacaaattccattttacttagtcaagtcatcgatcattttacaatataaacagaataacacca |
217 |
Q |
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| T |
36526994 |
actctacctctaactactcgatagttgaattataaccacaaattccattttacttagtcaagccatcgatcattttacaatataaacagaataacacca |
36526896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 47565349 - 47565444
Alignment:
| Q |
57 |
atctcttacttgaataacaagtaagccaaccaactcataacaaactagttagttactaactaactctacctctaactactcgatagttgaattata |
152 |
Q |
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|||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
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| T |
47565349 |
atctcttacttgaataacaagtaagcaaactaattcacaacaaactagttagttactaactaactctacttctaactacttggtagttgaattata |
47565444 |
T |
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