View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_4 (Length: 447)
Name: NF9925_low_4
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 7 - 426
Target Start/End: Complemental strand, 9385465 - 9385046
Alignment:
| Q |
7 |
gaagcagagaaaattcagagtgacttagtagggcttgcagagatttacaattgtatggaagaactcttcaactctccacaaactcaacaatctcttctac |
106 |
Q |
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| T |
9385465 |
gaagcagagaaaattcagagtgacttagtagggcttgcagagatttacaattgtatggaagaactcttcaactctccacaaactcaacaatctcttctac |
9385366 |
T |
|
| Q |
107 |
gttaccaagatggaaaactcatatcagattcattgtgtagctcaatcacattgctagatgcttgtgagtgttcaagggatttattattggttcttagaga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9385365 |
gttaccaagatggaaaactcatatcagattcattgtgtagctcaatcacattgctagatgcttgtgagtgttcaagggatttattattggttcttagaga |
9385266 |
T |
|
| Q |
207 |
acatatacaaacacttcaatcagcaatacgtagaagaagaaaaggtgattcaagcattgaaaacagtgtttcttcttatgaaaatttcagaaagaaggca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9385265 |
acatatacaaacacttcaatcagcaatacgtagaagaagaaaaggtgattcaagcattgaaaacagtgtttcttcttatgaaaatttcagaaagaaggca |
9385166 |
T |
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| Q |
307 |
aagaagaaaatttcataccaacttttggagctaaagaaaatgcagaacaaagttaactcattttctctttgtgatcaagatcaacaactagcatttttgg |
406 |
Q |
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| T |
9385165 |
aggaagaaaatttcataccaacttttggagctaaagaaaatgcagaacaaagttaactcattttctctttgtgatcaagatcaacaactagcatttttgg |
9385066 |
T |
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| Q |
407 |
ttagagttttaagagaagtg |
426 |
Q |
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| T |
9385065 |
ttagagttttaagagaagtg |
9385046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 286 - 425
Target Start/End: Complemental strand, 31948271 - 31948132
Alignment:
| Q |
286 |
gaaaatttcagaaagaaggcaaagaagaaaatttcataccaacttttggagctaaagaaaatgcagaacaaagttaactcattttctctttgtgatcaag |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31948271 |
gaaaatttcagaaagaaggcaaagaagaaaatttcataccaatttttggagctaaagaaaatgcagagcaaagttaactcattttctctttgtgatcaag |
31948172 |
T |
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| Q |
386 |
atcaacaactagcatttttggttagagttttaagagaagt |
425 |
Q |
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| T |
31948171 |
atcaacaactagcatttttggttagggttttaagagaagt |
31948132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 31454992 - 31455077
Alignment:
| Q |
11 |
cagagaaaattcagagtgacttagtagggcttgcagagatttacaattgtatggaagaactcttcaactctccacaaactcaacaa |
96 |
Q |
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|||||| |||||| ||||| || || | |||||| ||| | |||||||| ||||||||||||||| | |||| |||||| |||||| |
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| T |
31454992 |
cagagacaattcaaagtgatttggttgtgcttgctgagttatacaattgcatggaagaactcttccaatctcaacaaacacaacaa |
31455077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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