View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_42 (Length: 227)
Name: NF9925_low_42
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 52804667 - 52804441
Alignment:
| Q |
1 |
ttaggtcaagtaatattcatcttaacaaaaggtggatccaaaagcattgaagagaagaaccaaaaaactgttatcaatttgttgtggcaaatcagtgaaa |
100 |
Q |
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| T |
52804667 |
ttaggtcaagtaatattcatcttaacaaaaggtggatccaaaagcattgaagagaagaaccaaaaaactgttatcaatttgttgtggcaaatcagtgaaa |
52804568 |
T |
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| Q |
101 |
ctaagcctaatttcttgagccccaagagaaaagctgaatttgatttgttttccaaaatcaagaaccctagaattgaagagaatgaaaaggggttgttgat |
200 |
Q |
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| T |
52804567 |
ctaagcctaatttcttgagccccaagagaaaagctgaatttgatttgttttccaaaatcaagaaccctagaattgaagagaatgaaaaggggttgttgat |
52804468 |
T |
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| Q |
201 |
ttctgaacaaggaagcaaaaaggaaga |
227 |
Q |
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| T |
52804467 |
ttctgaacaaggaagcaaaaaggaaga |
52804441 |
T |
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