View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_45 (Length: 208)
Name: NF9925_low_45
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_45 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 39812863 - 39813070
Alignment:
| Q |
1 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39812863 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
39812962 |
T |
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| Q |
101 |
tttgtccatacaggtatcatatcattaatccatttagattttccaatgtacgatttgcatgactaaataacttaggagtaacatgggtagatatttaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39812963 |
tttgtccatacaggtatcatatcattaatccatttagattttccaatgtacgatttgcatgactaaataacttaggagtaacatgggtagatatttaaaa |
39813062 |
T |
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| Q |
201 |
tttacgat |
208 |
Q |
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|||||||| |
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| T |
39813063 |
tttacgat |
39813070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 39824376 - 39824579
Alignment:
| Q |
1 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || |
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| T |
39824376 |
tggtggtagaatatttgaaagacgcttgcacgttggttttattactatggaaccaagcccactttttgttcctcaatatcttgattccactctcatcata |
39824475 |
T |
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| Q |
101 |
tttgtccatacaggtatcatatcattaatccatttagattttccaatgtacgatttgcatgactaaataacttaggagtaacatgggtagatatttaaaa |
200 |
Q |
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| T |
39824476 |
tttgtccttacaggtatcatatcatcgatccatataggttttccaatgtacgatctgcatgacaaaa----ttacgagtaacatggctagatatttaaaa |
39824571 |
T |
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| Q |
201 |
tttacgat |
208 |
Q |
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|||||||| |
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| T |
39824572 |
tttacgat |
39824579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 39920308 - 39920450
Alignment:
| Q |
1 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
100 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39920308 |
tggtggtagaatattggaaagacgcttacacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcata |
39920407 |
T |
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| Q |
101 |
tttgtccatacaggtatcatatcattaatccatttagattttc |
143 |
Q |
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| T |
39920408 |
tttgtccttacaggtatcatatcattgatccatttagattttc |
39920450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 39908806 - 39908947
Alignment:
| Q |
1 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
100 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39908806 |
tggtggtagaatattggaaagacgcttacacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcata |
39908905 |
T |
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| Q |
101 |
tttgtccatacaggtatcatatcattaatccatttagatttt |
142 |
Q |
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| T |
39908906 |
tttgtccttacaggtatcatatcattaatccatttggatttt |
39908947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 39804192 - 39804320
Alignment:
| Q |
1 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
100 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39804192 |
tggtggtagaatatctgaaagacgtttacacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcata |
39804291 |
T |
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| Q |
101 |
tttgtccatacaggtatcatatcattaat |
129 |
Q |
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| T |
39804292 |
tttgtccttacaggtatcatatcattaat |
39804320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 39881471 - 39881613
Alignment:
| Q |
1 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
100 |
Q |
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|||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| || |
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| T |
39881471 |
tggtggaagaatattggaaagacgcttgcacgttggttttattactatggaaccaagctcactttttgttcctcaatatctggattccactctaatcata |
39881570 |
T |
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| Q |
101 |
tttgtccatacaggtatcatatcattaatccatttagattttc |
143 |
Q |
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||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
39881571 |
tttgtccttacaggtatcatatcaataactcatttagattttc |
39881613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 39804480 - 39804539
Alignment:
| Q |
145 |
aatgtacgatttgcatgactaaataacttaggagtaacatgggtagatatttaaaattta |
204 |
Q |
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| T |
39804480 |
aatgtacaatttgcatgactaaaaaacttaggagtaacatggctagatacttaaaattta |
39804539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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