View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_46 (Length: 207)
Name: NF9925_low_46
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 40888727 - 40888899
Alignment:
| Q |
17 |
agacaaattgcgattgttaataattcttgtagatagtatgcaaggaatgtatatttagaaaagagaaaacggaataggctgatagttattcccctgtata |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40888727 |
agacaaattgcaattgttaataattcttgtagatagtatgcaaggaatgtatatttagaaaagagaaaacggaataggctgatagttattcccctgaata |
40888826 |
T |
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| Q |
117 |
aaaaactatatttaagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttc |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888827 |
aaaaactatatttaagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttc |
40888899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 44139957 - 44140129
Alignment:
| Q |
17 |
agacaaattgcgattgttaataattcttgtagatagtatgcaaggaatgtatatttagaaaagagaaaacggaataggctgatagttattcccctgtata |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44139957 |
agacaaattgcaattgttaataattcttgtagatagtatgcaaggaatgtatatttagaaaagagaaaacggaataggctgatagttattcccctgaata |
44140056 |
T |
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| Q |
117 |
aaaaactatatttaagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttc |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44140057 |
aaaaactatatttaagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttc |
44140129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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