View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_5 (Length: 426)
Name: NF9925_low_5
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 248 - 416
Target Start/End: Complemental strand, 14497283 - 14497115
Alignment:
| Q |
248 |
ggtatgaaaatgagtattcatggaagcaagaacaataaattttgagtagttggaatttcattgatgatgaaacttcaaccttttttcctatttatagtga |
347 |
Q |
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| T |
14497283 |
ggtatgaaaatgagtattcatggaagcaagaacaataaattttgagtagtgggaatttcattgatgatgaaacttcaaccttttttcctatttatagtga |
14497184 |
T |
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| Q |
348 |
ttgcagaatttcatggttcttcagttagttaatgtttcactaaatgatgtttctactcttgtctgtgct |
416 |
Q |
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| T |
14497183 |
ttgcagaatttcatggttcttcagttagttaatgtttcactaaatgatgtttctactcttgtgtgtgct |
14497115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 14497527 - 14497365
Alignment:
| Q |
19 |
gttagaagggacacaaatagcaatggacatgaggtatatgcaaatgcaatgcaatttctgaaaattcacaccaagaaattaaagtttctgtttgtttttt |
118 |
Q |
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| T |
14497527 |
gttagaagggacacaaatagcaatggacatgaggtatatgcaaatgcaatgcaatttctgaaaattcacaccaagaaattaaagtttctgtttgtttttt |
14497428 |
T |
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| Q |
119 |
aagtttattaaannnnnnnggttcatcaaatgaagcaagacattattaacaaacaaatatact |
181 |
Q |
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| T |
14497427 |
aagtttattaaatttttttggttcatcaaatgaagcaagacattattaacaaccaaatatact |
14497365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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