View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9925_low_6 (Length: 424)
Name: NF9925_low_6
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9925_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 14772119 - 14771730
Alignment:
| Q |
1 |
agactcataggtcgatctcttaagtatgcttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatattaaag |
100 |
Q |
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| T |
14772119 |
agactcataggtcgatctcttatgtatgcttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatattaaag |
14772020 |
T |
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| Q |
101 |
ttgttaaatctattatggtaactgaatccattatacacctgtattgcagttggagttgccgtgacgattgggatggttctgcgactgcaaggaagaatgc |
200 |
Q |
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| T |
14772019 |
ttgttaaatctattatggtaacttaatccattatacacctgtattgcagttggagttgccatgacgattgggatggttctgcgactgcaaggaagaatgc |
14771920 |
T |
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| Q |
201 |
gtcaaggaagaataacaaagaaacagacaataacatcactcaaaaattcaaaatctaaacagtgcaaaagcatctacccagaaagaatggatgcagaaag |
300 |
Q |
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| T |
14771919 |
gtcaaggaagaataacaaagaaacagacaataacatcactcaaaaattcaaaatctaaacagtgcaaaagtatctacccagaaagaatggat-------- |
14771828 |
T |
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| Q |
301 |
aatggatgcagcctgcttttggctaagctacattctcttttaacaataaaggcnnnnnnnnacgccatctattctagagtttagcacaaatccccatagc |
400 |
Q |
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| T |
14771827 |
-------gcagcctgcttttggctaagctacattctcttttaacaataaaggc-tttttttacgccatctattctagagtttagcacaaacccccatagc |
14771736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 17878844 - 17878747
Alignment:
| Q |
14 |
gatctcttaagtatgcttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatattaaagttgttaaatct |
111 |
Q |
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| T |
17878844 |
gatctcttcagtttgtttcaggtatatcaattttagattttacttgttagttgttcattaagttccttttgactttgtatattagagtttttcaatct |
17878747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 15014237 - 15014113
Alignment:
| Q |
1 |
agactcataggtcgatctcttaagtatgcttcaggtatatcattttccaggttaacttgtta-attgttcgttaagttccttttaactttgtatat-taa |
98 |
Q |
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| T |
15014237 |
agactcatagatcgatctcttatgtttgtttcaggtatattattttttaggtttacttgttagtttcttcattaaattgcttttgactttgtatatatta |
15014138 |
T |
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| Q |
99 |
agttgttaaatctattatggtaact |
123 |
Q |
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|||| || ||||||| ||| ||||| |
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| T |
15014137 |
agtttttcaatctatcatgctaact |
15014113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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