View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9925_low_8 (Length: 417)

Name: NF9925_low_8
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9925_low_8
NF9925_low_8
[»] chr7 (3 HSPs)
chr7 (200-396)||(38231446-38231642)
chr7 (18-162)||(38231680-38231824)
chr7 (323-398)||(19831011-19831085)
[»] chr6 (3 HSPs)
chr6 (23-152)||(7694623-7694752)
chr6 (272-350)||(7694858-7694936)
chr6 (200-247)||(7694802-7694850)
[»] chr8 (3 HSPs)
chr8 (23-152)||(30151835-30151964)
chr8 (272-350)||(30152076-30152154)
chr8 (26-66)||(9059557-9059596)
[»] chr4 (4 HSPs)
chr4 (280-391)||(55862988-55863098)
chr4 (23-70)||(55863268-55863315)
chr4 (106-152)||(55863208-55863254)
chr4 (27-70)||(24626015-24626058)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 200 - 396
Target Start/End: Complemental strand, 38231642 - 38231446
Alignment:
Q  200 aaagtggttgagctcattacaaagtctaaaaacttaatactaataatcaaatagattgaaattagactagtcttgaaattattatgaaccataaagatcc 299  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38231642 aaagtagttgagctcattacaaagtctaaaaacttaatactaataatcaaatagattgaaattagactagtcttgaaattattatgaaccataaagatcc 38231543  T
Q  300 tcaactcacaaacaaatccaaagaaaccaaaaccaaattcataacataattctaatattctgttgtaattggctcggcttcaaatcaaagctcccaa 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38231542 tcaactcacaaacaaatccaaagaaaccaaaaccaaattcataacataattctaattttctgttgtaattggctcggcttcaaatcaaagctcccaa 38231446  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 38231824 - 38231680
Alignment:
Q  18 ctaacgtggcatttagcttggaaccattgaagtattggtctatgatggaccaannnnnnncaaccttagattagatcatcctagtaactcttatcatagt 117  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||       |||| ||||||||||||||||||||||||||||||||| |    
T  38231824 ctaacgtgtcatttagcttggaaccattgaagtattggtccatgatggaccaatttttttcaactttagattagatcatcctagtaactcttatcataat 38231725  T
Q  118 ccagccacaccaaatctaactcatcaacttcatctttcatagcaa 162  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  38231724 ccagccacaccaaatctaactcatcaacttcatctctcatagcaa 38231680  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 19831011 - 19831085
Alignment:
Q  323 aaaccaaaaccaaattcataacataattctaatattctgttgtaattggctcggcttcaaatcaaagctcccaatc 398  Q
    ||||||||||||||||||||  ||| ||||||| ||||| ||||||||||||  ||||||||| ||||| ||||||    
T  19831011 aaaccaaaaccaaattcatatgata-ttctaattttctgctgtaattggctctacttcaaatccaagcttccaatc 19831085  T

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Target: chr6 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 7694623 - 7694752
Alignment:
Q  23 gtggcatttagcttggaaccattgaagtattggtctatgatggaccaannnnnnncaaccttagattagatcatcctagtaactcttatcatagtccagc 122  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||       |||||||||||||||||||||||| || ||||||||||||||| |    
T  7694623 gtggcatttagcttggacccattgaagtattggtccatgatggaccaatttttttcaaccttagattagatcatcctagcaattcttatcatagtccatc 7694722  T
Q  123 cacaccaaatctaactcatcaacttcatct 152  Q
    ||||||||||||||||||||||||||||||    
T  7694723 cacaccaaatctaactcatcaacttcatct 7694752  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 7694858 - 7694936
Alignment:
Q  272 ttgaaattattatgaaccataaagatcctcaactcacaaacaaatccaaagaaaccaaaaccaaattcataacataatt 350  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  7694858 ttgaaattattatgaaccataaagaacctcaacttacaaacaaacccaaagaaaccaaaaccaaattcataacataatt 7694936  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 7694802 - 7694850
Alignment:
Q  200 aaagtggttgagctcattacaaa-gtctaaaaacttaatactaataatc 247  Q
    ||||||| ||||||||||||||| || ||||| ||||||||||||||||    
T  7694802 aaagtggctgagctcattacaaatgtataaaagcttaatactaataatc 7694850  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 30151835 - 30151964
Alignment:
Q  23 gtggcatttagcttggaaccattgaagtattggtctatgatggaccaannnnnnncaaccttagattagatcatcctagtaactcttatcatagtccagc 122  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||       |||||||||||||||||||| ||| || ||||||| ||||||| |    
T  30151835 gtggcatttagcttggacccattgaagtattggtccatgatggaccaatttttttcaaccttagattagatcatcatagcaattcttatcgtagtccatc 30151934  T
Q  123 cacaccaaatctaactcatcaacttcatct 152  Q
    ||||||||||| ||||||||||||||||||    
T  30151935 cacaccaaatcaaactcatcaacttcatct 30151964  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 30152076 - 30152154
Alignment:
Q  272 ttgaaattattatgaaccataaagatcctcaactcacaaacaaatccaaagaaaccaaaaccaaattcataacataatt 350  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  30152076 ttgaaattattatgaaccataaagaacctcaacttacaaacaaacccaaagaaaccaaaaccaaattcataacataatt 30152154  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 9059557 - 9059596
Alignment:
Q  26 gcatttagcttggaaccattgaagtattggtctatgatgga 66  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  9059557 gcatttag-ttggatccattgaagtattggtctatgatgga 9059596  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 391
Target Start/End: Complemental strand, 55863098 - 55862988
Alignment:
Q  280 attatgaaccataaagatcctcaactcacaaacaaatccaaagaaaccaaaaccaaattcataacataattctaatattctgttgtaattggctcggctt 379  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||||||||||| |  ||| |  | |  ||||||| |||||||||||||||||  ||||    
T  55863098 attatgaaccataaagaacctcaattcacaaacaaacccaaagaaaccaaaactagtttcctgtcgt-gttctaattttctgttgtaattggctatgctt 55863000  T
Q  380 caaatcaaagct 391  Q
    |||||| |||||    
T  55862999 caaatccaagct 55862988  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 55863315 - 55863268
Alignment:
Q  23 gtggcatttagcttggaaccattgaagtattggtctatgatggaccaa 70  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  55863315 gtggcatttagcttggatctattgaagtattggtccatgatggaccaa 55863268  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 55863254 - 55863208
Alignment:
Q  106 tcttatcatagtccagccacaccaaatctaactcatcaacttcatct 152  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||||    
T  55863254 tcttatcatagtctatccacaccaaatctaactcataaacttcatct 55863208  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 24626058 - 24626015
Alignment:
Q  27 catttagcttggaaccattgaagtattggtctatgatggaccaa 70  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||    
T  24626058 catttagcttggacccattgaggtattggtccatgatggaccaa 24626015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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