View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9925_low_9 (Length: 394)

Name: NF9925_low_9
Description: NF9925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9925_low_9
NF9925_low_9
[»] chr2 (2 HSPs)
chr2 (17-167)||(40049544-40049694)
chr2 (116-188)||(38550912-38550984)
[»] chr5 (3 HSPs)
chr5 (66-188)||(2428502-2428624)
chr5 (67-151)||(6849697-6849781)
chr5 (197-240)||(2621186-2621229)
[»] chr1 (1 HSPs)
chr1 (66-188)||(40821941-40822062)
[»] chr7 (1 HSPs)
chr7 (65-150)||(34328753-34328838)
[»] chr6 (1 HSPs)
chr6 (102-157)||(29419978-29420033)
[»] chr3 (1 HSPs)
chr3 (66-184)||(46863483-46863601)
[»] chr4 (1 HSPs)
chr4 (63-135)||(17290986-17291058)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 40049694 - 40049544
Alignment:
Q  17 caaagatacctcattttcacctcacattgtttataaatctttacactgtgtttggaagcccaaaaccaattcccaatgcgcttttaccgtgatttggctg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  40049694 caaagatacctcattttcacctcacattgtttataaatctttacattgtgtttggaagcccaaaaccaattcccaatgcactttcaccgtgatttggctg 40049595  T
Q  117 aagctggaaaacatagcttctatccaaacgtgattttccacagtgatttta 167  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40049594 aagctggaaaacatagcttctatccaaacgtgattttccaccgtgatttta 40049544  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 38550912 - 38550984
Alignment:
Q  116 gaagctggaaaacatagcttctatccaaacgtgattttccacagtgattttacaagttccaacgtcataccaa 188  Q
    |||||| ||||||||||||| |||| ||| |||||||| ||| ||| |||||||  |||||||| | ||||||    
T  38550912 gaagctagaaaacatagcttttatctaaaagtgatttttcaccgtgcttttacatattccaacgccgtaccaa 38550984  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 2428624 - 2428502
Alignment:
Q  66 gtttggaagcccaaaaccaattcccaatgcgcttttaccgtgatttggctgaagctggaaaacatagcttctatccaaacgtgattttccacagtgattt 165  Q
    ||||||||| ||||||||||||  |||||| |||| |||||||| |||| ||||||||||||||| | ||||| | |||||||||||||||  ||| |||    
T  2428624 gtttggaagtccaaaaccaatttacaatgcactttcaccgtgatgtggcagaagctggaaaacatggtttctacctaaacgtgattttccattgtgcttt 2428525  T
Q  166 tacaagttccaacgtcataccaa 188  Q
    |||||||||||||||||||||||    
T  2428524 tacaagttccaacgtcataccaa 2428502  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 6849781 - 6849697
Alignment:
Q  67 tttggaagcccaaaaccaattcccaatgcgcttttaccgtgatttggctgaagctggaaaacatagcttctatccaaacgtgatt 151  Q
    ||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  6849781 tttggaagcccaaaaccaatttccattgcactttgaccgtgatttggctgaagctggaaaacattgcttctacccagacgtgatt 6849697  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 2621229 - 2621186
Alignment:
Q  197 ttagtctcactattttatcccatgtgagatttctattttcaaca 240  Q
    |||||||||||||||||||| |||||| | ||||||||||||||    
T  2621229 ttagtctcactattttatccgatgtgaaacttctattttcaaca 2621186  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 40821941 - 40822062
Alignment:
Q  66 gtttggaagcccaaaaccaattcccaatgcgcttttaccgtgatttggctgaagctggaaaacatagcttctatccaaacgtgattttccacagtgattt 165  Q
    ||||||||||||||||||||||| || |||  ||| ||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||| || ||||    
T  40821941 gtttggaagcccaaaaccaattctca-tgcaatttcaccgtgatttggctgaagctggaaaacatggtttctacccaaatgtgattttccaccgtaattt 40822039  T
Q  166 tacaagttccaacgtcataccaa 188  Q
    |  ||||||||||||||||||||    
T  40822040 tgtaagttccaacgtcataccaa 40822062  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 34328753 - 34328838
Alignment:
Q  65 tgtttggaagcccaaaaccaattcccaatgcgcttttaccgtgatttggctgaagctggaaaacatagcttctatccaaacgtgat 150  Q
    ||||||||||||||||||||||||||||||| |||| |||  |||| ||||||||||| |||| ||| |||||| |||||||||||    
T  34328753 tgtttggaagcccaaaaccaattcccaatgcactttcaccaagattcggctgaagctgcaaaatataacttctaaccaaacgtgat 34328838  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 29420033 - 29419978
Alignment:
Q  102 accgtgatttggctgaagctggaaaacatagcttctatccaaacgtgattttccac 157  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||    
T  29420033 accgtgatttgactgaagctggaaaacatagcttctactcaaacgtgattttccac 29419978  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 46863601 - 46863483
Alignment:
Q  66 gtttggaagcccaaaaccaattcccaatgcgcttttaccgtgatttggctgaagctggaaaacatagcttctatccaaacgtgattttccacagtgattt 165  Q
    ||||||||| |||| |||| || ||||||| |||| |||||||   ||| ||||||| ||| |||| |||||| |||||||||||||||||| ||  |||    
T  46863601 gtttggaagtccaataccactttccaatgcactttcaccgtgaaaaggcagaagctgaaaatcatatcttctacccaaacgtgattttccaccgtacttt 46863502  T
Q  166 tacaagttccaacgtcata 184  Q
    |||| ||||||||| ||||    
T  46863501 tacatgttccaacgccata 46863483  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 17291058 - 17290986
Alignment:
Q  63 tgtgtttggaagcccaaaaccaattcccaatgcgcttttaccgtgatttggctgaagctggaaaacatagctt 135  Q
    ||||||||||| || |||| |||||| |||||| |||| |||||||||||||| ||||| |||||||| ||||    
T  17291058 tgtgtttggaaacctaaaatcaattctcaatgcactttcaccgtgatttggctaaagctagaaaacatggctt 17290986  T

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