View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_high_1 (Length: 584)
Name: NF9926_high_1
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 247 - 566
Target Start/End: Original strand, 1254091 - 1254410
Alignment:
| Q |
247 |
ctgacttgaacattggtgtctccagcaagtcctaggatttttgccaatccagcctgtcacagtnnnnnnnttataaacgttcaatcaatggtaaaaatag |
346 |
Q |
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| T |
1254091 |
ctgacttgaacattggtgtctccagcaagtcctaggatttttgccaatccagcctgtcacagtaaaaaaattataaacgttcaatcaatggtaaaaatag |
1254190 |
T |
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| Q |
347 |
aaaacaaaagtaactgtgaattttgtctaatcaaaatgaatgacatgagagtgtgtaccttgttaacagaagaacaaacaaatttgcagccaagaacaat |
446 |
Q |
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| T |
1254191 |
aaaacaaaagtaactgtgaattttgtctaataaaaatgaatgacatgagagtgtgtaccttgttaacagaagaacaaacaaatttgcagccaagaacaat |
1254290 |
T |
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| Q |
447 |
gtgattgatgagaatggtgaaatccccacgtgattcagcatactttgattgctcattcagaacaaaccttgttattgtcatcaaatcagttctgttagca |
546 |
Q |
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| T |
1254291 |
gtgattgatgagaatggtgaaatccccacgtgattcagcatactttgattgctcattcagaacaaaccttgttattgtcatcaaatcagttctgttagca |
1254390 |
T |
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| Q |
547 |
tctgcttggtgatccatatt |
566 |
Q |
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| T |
1254391 |
tctgcttggtgatccatatt |
1254410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 1253844 - 1254057
Alignment:
| Q |
1 |
cttttataaggatagtagaaattagtactattatatgagagannnnnnnnnnnnnnnnnngagagaattatatggtatgtccattaaactcattaaataa |
100 |
Q |
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| T |
1253844 |
cttttataaggatagtagaaattagtactattatatgagagaatttttttatttttttttgagagaattatatggtatgtccattaaactcattaaataa |
1253943 |
T |
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| Q |
101 |
ataatgnnnnnnnngtcataatattatttcagatttagatggtgtcgctatcacacaaaaaagatttatatggtgtgacaaagtcacatattaacacgaa |
200 |
Q |
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| T |
1253944 |
ataatgttttttttgtcataatattatttcagatttagatggtatcgctatcacacaaaaaagatttagatggtgtgacaaagtcacatattaacacgaa |
1254043 |
T |
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| Q |
201 |
cacgtaacgttctt |
214 |
Q |
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| T |
1254044 |
cacgtaacgttctt |
1254057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 401 - 530
Target Start/End: Complemental strand, 12627379 - 12627250
Alignment:
| Q |
401 |
gtaccttgttaacagaagaacaaacaaatttgcagccaagaacaatgtgattgatgagaatggtgaaatccccacgtgattcagcatactttgattgctc |
500 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||| ||| | | ||||||||||| ||||||||||||| || ||| || || || |
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| T |
12627379 |
gtaccttgttaacagcagaacaaacaaatttgcaaccaagaacaatgttattaagcaagatggtgaaatctccacgtgattcaggatgcttagactgttc |
12627280 |
T |
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| Q |
501 |
attcagaacaaaccttgttattgtcatcaa |
530 |
Q |
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| T |
12627279 |
attcaacacaaaacgtgttatggtcatcaa |
12627250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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