View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_high_14 (Length: 351)
Name: NF9926_high_14
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 218 - 341
Target Start/End: Complemental strand, 13020035 - 13019912
Alignment:
| Q |
218 |
cagaacacaccttatgatgaacataaccatggtttctcacaagaagctgaaccaattcatttccatcaaaacaattcctcacaatcttcatcttcatcaa |
317 |
Q |
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| T |
13020035 |
cagaacacaccttattatgaacataaccatggtttctcacaagaagctgaaccaattcatttccatcaaaacaattcctcacaatcttcatcttcatcaa |
13019936 |
T |
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| Q |
318 |
cctatcttgaatcggtaatctctg |
341 |
Q |
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| T |
13019935 |
ccgatcttgaatcggtaatctctg |
13019912 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 13020244 - 13020166
Alignment:
| Q |
18 |
tgaactctttcattactatccaaaacagtcaaatattattttaagctaaaaaagattactactccaatctttcaaaatc |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
13020244 |
tgaactctttcattactatccaaaacagtcaaatattattttaagctaaaaaagattattactataatctttcaaaatc |
13020166 |
T |
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