View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9926_high_15 (Length: 330)

Name: NF9926_high_15
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9926_high_15
NF9926_high_15
[»] chr2 (7 HSPs)
chr2 (31-165)||(44247014-44247148)
chr2 (225-312)||(44246856-44246943)
chr2 (93-165)||(23701629-23701701)
chr2 (93-160)||(12432861-12432928)
chr2 (43-165)||(22017706-22017829)
chr2 (50-162)||(10354842-10354955)
chr2 (132-165)||(14323080-14323113)
[»] chr1 (8 HSPs)
chr1 (7-165)||(42366564-42366722)
chr1 (44-165)||(50677477-50677597)
chr1 (225-312)||(50677658-50677745)
chr1 (225-312)||(42366406-42366493)
chr1 (28-143)||(49765567-49765682)
chr1 (93-160)||(29465518-29465585)
chr1 (98-160)||(35306272-35306335)
chr1 (50-122)||(15582289-15582361)
[»] scaffold0110 (2 HSPs)
scaffold0110 (44-165)||(37886-38007)
scaffold0110 (225-312)||(38078-38170)
[»] chr3 (6 HSPs)
chr3 (31-165)||(27011867-27012001)
chr3 (225-312)||(27011711-27011798)
chr3 (19-162)||(44714005-44714149)
chr3 (93-160)||(2144597-2144664)
chr3 (50-162)||(39439292-39439405)
chr3 (98-160)||(35231288-35231351)
[»] chr7 (6 HSPs)
chr7 (225-312)||(23416721-23416808)
chr7 (96-165)||(23416578-23416647)
chr7 (93-160)||(28300776-28300843)
chr7 (32-122)||(19848460-19848550)
chr7 (32-109)||(36656814-36656891)
chr7 (98-165)||(12634051-12634119)
[»] chr8 (1 HSPs)
chr8 (17-160)||(34924020-34924164)
[»] chr4 (4 HSPs)
chr4 (17-160)||(41222943-41223087)
chr4 (46-165)||(48085202-48085321)
chr4 (43-160)||(50859398-50859516)
chr4 (98-165)||(31228992-31229060)
[»] chr5 (2 HSPs)
chr5 (50-162)||(11617827-11617939)
chr5 (74-165)||(7505344-7505436)
[»] scaffold0039 (1 HSPs)
scaffold0039 (33-160)||(57622-57750)
[»] scaffold0022 (2 HSPs)
scaffold0022 (50-165)||(43496-43612)
scaffold0022 (50-165)||(77216-77332)
[»] scaffold0075 (1 HSPs)
scaffold0075 (93-160)||(12154-12221)
[»] chr6 (2 HSPs)
chr6 (93-160)||(10144760-10144827)
chr6 (32-165)||(6193086-6193219)


Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 44247148 - 44247014
Alignment:
Q  31 cggaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgt 130  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  44247148 cggaatggaatagagattacattccatcgtttggatatttcacgatggaacgaaactaactttccactccattgtttgggaagttgacagaatggaatgt 44247049  T
Q  131 attataattttttattctaattttaacctttattt 165  Q
    ||||||||||||||||| |||||||||||||||||    
T  44247048 attataattttttattccaattttaacctttattt 44247014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 44246943 - 44246856
Alignment:
Q  225 gcttcacatataagaatgatgcatccaaaatatgaactcgctgcaaattaaaacatggatgttttattatctacttctaatgatgaaa 312  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44246943 gcttcacatataagaatgatgcatccagaatatgaactcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaa 44246856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 23701701 - 23701629
Alignment:
Q  93 tccactccattgtttgggaagttgacggaatggaatgtattataattttttattctaattttaacctttattt 165  Q
    |||| |||||||||||| ||||||| | |||||||||  |||||| ||||||||| |||||| ||||||||||    
T  23701701 tccattccattgtttggaaagttgatgaaatggaatgagttataactttttattccaattttgacctttattt 23701629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 12432861 - 12432928
Alignment:
Q  93 tccactccattgtttgggaagttgacggaatggaatgtattataattttttattctaattttaacctt 160  Q
    |||| |||||||||||| ||||||||||||||||||  ||||||| ||||||||| | ||||| ||||    
T  12432861 tccattccattgtttggaaagttgacggaatggaataaattataactttttattccatttttaccctt 12432928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 22017706 - 22017829
Alignment:
Q  43 aagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattataa-tttt 141  Q
    |||||| |||||||| ||| ||||| || || |||||| | | |||| | | || ||||||||| || || ||||||||| |||||| ||||||| ||||    
T  22017706 aagattccattccattgttcggatactttacaatggaatgcaactaatttttcattccattgttaggaaaattgacggaacggaatgaattataattttt 22017805  T
Q  142 ttattctaattttaacctttattt 165  Q
    ||||||  |||||| |||||||||    
T  22017806 ttattcatattttaccctttattt 22017829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 10354955 - 10354842
Alignment:
Q  50 cattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattataa-ttttttattct 148  Q
    |||||||| |||||||||||||| || |||| | | |||| |  |||||||||||||||| | ||  |||||| ||||  | |||||| ||||||||||     
T  10354955 cattccattgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaggtgaacggaacggaacatgttataacttttttattcc 10354856  T
Q  149 aattttaaccttta 162  Q
    ||||||| ||||||    
T  10354855 aattttacccttta 10354842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 14323080 - 14323113
Alignment:
Q  132 ttataattttttattctaattttaacctttattt 165  Q
    |||||||||||||||||||||||| |||||||||    
T  14323080 ttataattttttattctaattttaccctttattt 14323113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 42366722 - 42366564
Alignment:
Q  7 ggagcagagaggaatggaacagagcggaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtt 106  Q
    ||||| || ||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||  ||| |||| ||||||||||||||    
T  42366722 ggagcggaaaggaatggaacggagcggaatggaatagagattacattccatcgtttggatatttcacgatggaacagagccaactttccactccattgtt 42366623  T
Q  107 tgggaagttgacggaatggaatgtattataattttttattctaattttaacctttattt 165  Q
    ||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||    
T  42366622 tggaaagttgacagaatggaatgtattatatttttttattccaattttaacctttattt 42366564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 50677477 - 50677597
Alignment:
Q  44 agattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattataatttttt 143  Q
    ||||||||||||||||||||||||||| ||||||||||| | |||||| ||||||| |||||||| |||||||||||||||||||||| |||||||||||    
T  50677477 agattacattccatcgtttggatattttacgatggaacggaactaactttccactctattgtttgagaagttgacggaatggaatgta-tataatttttt 50677575  T
Q  144 attctaattttaacctttattt 165  Q
    |||| |||||||||||||||||    
T  50677576 attccaattttaacctttattt 50677597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 50677658 - 50677745
Alignment:
Q  225 gcttcacatataagaatgatgcatccaaaatatgaactcgctgcaaattaaaacatggatgttttattatctacttctaatgatgaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  50677658 gcttcacatataagaatgatgcatccaaaatatgaactcgctgcaaattaaaacacggatgttttattatctacctctaatgatgaaa 50677745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 42366493 - 42366406
Alignment:
Q  225 gcttcacatataagaatgatgcatccaaaatatgaactcgctgcaaattaaaacatggatgttttattatctacttctaatgatgaaa 312  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42366493 gcttcacatataagaacgatgcatccagaatatgaactcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaa 42366406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 49765682 - 49765567
Alignment:
Q  28 gagcggaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaa 127  Q
    |||||||||||||  || | | |||||||| ||||| |||||| ||||||||| ||| |||| |  |||||||||||||||  |||| ||||||| ||||    
T  49765682 gagcggaatggaaaaaaaaattcattccattgtttgaatattttacgatggaatgaaactaatttcccactccattgtttgaaaagtggacggaacggaa 49765583  T
Q  128 tgtattataatttttt 143  Q
     || |||||| |||||    
T  49765582 agtgttataacttttt 49765567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 29465518 - 29465585
Alignment:
Q  93 tccactccattgtttgggaagttgacggaatggaatgtattataattttttattctaattttaacctt 160  Q
    |||| |||||||||||| ||||||||| ||||||||  ||||||| ||||||||| | ||||| ||||    
T  29465518 tccattccattgtttggaaagttgacgaaatggaataaattataactttttattccatttttaccctt 29465585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 35306272 - 35306335
Alignment:
Q  98 tccattgtttgggaagttgacggaatggaatgtattataa-ttttttattctaattttaacctt 160  Q
    |||||||||||| || ||||||||||||||||  |||||| |||||||||| ||||||| ||||    
T  35306272 tccattgtttggaaaattgacggaatggaatgagttataatttttttattccaattttaccctt 35306335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 15582361 - 15582289
Alignment:
Q  50 cattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaa 122  Q
    |||||||| ||||||||| || | ||||||| | | |||| | |||| |||||||||||| ||||||||||||    
T  15582361 cattccattgtttggatactttatgatggaatggaactaattttccattccattgtttggaaagttgacggaa 15582289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 37886 - 38007
Alignment:
Q  44 agattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattataatttttt 143  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  37886 agattacattccatcgtttggatatttcacgatggaacggagttaactttccactccattgtttggaaagatgacggaatggaatgtattataatttttt 37985  T
Q  144 attctaattttaacctttattt 165  Q
    |||  |||||||||||||||||    
T  37986 atttcaattttaacctttattt 38007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 38078 - 38170
Alignment:
Q  225 gcttcacatataagaatgatgcatccaaaatatgaactcg-----ctgcaaattaaaacatggatgttttattatctacttctaatgatgaaa 312  Q
    ||||||||| ||||| ||||||||||| ||||||||||||     |||||||||||||||||||||||||||||||||| |||||||||||||    
T  38078 gcttcacatgtaagagtgatgcatccagaatatgaactcgcctcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaa 38170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 27012001 - 27011867
Alignment:
Q  31 cggaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgt 130  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| | |||||||| ||| ||||||||||||| ||||||||| ||||||||||    
T  27012001 cggaatggaatagagattacattccatcatttggatatttcacgatggaagggagctaactttccgctccattgtttggaaagttgacgaaatggaatgt 27011902  T
Q  131 attataattttttattctaattttaacctttattt 165  Q
    ||||||||||||||||| |||||||||||||||||    
T  27011901 attataattttttattccaattttaacctttattt 27011867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 27011798 - 27011711
Alignment:
Q  225 gcttcacatataagaatgatgcatccaaaatatgaactcgctgcaaattaaaacatggatgttttattatctacttctaatgatgaaa 312  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27011798 gcttcacatataagagtgatgcatccagaatatgaattcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaa 27011711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 44714149 - 44714005
Alignment:
Q  19 aatggaacagagcggaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgac 118  Q
    |||||||  |||||||||||||  |||||| ||||| || |||||||||||| ||||||||| | | |||| | | || || ||||||||| || |  ||    
T  44714149 aatggaatggagcggaatggaataaagatttcattcaattgtttggatattttacgatggaatggaactaatttttcattctattgtttggcaaatgaac 44714050  T
Q  119 ggaatggaatgtattataa-ttttttattctaattttaaccttta 162  Q
    |||| |||||| ||||||| |||||||||| ||||||| ||||||    
T  44714049 ggaacggaatgaattataatttttttattccaattttacccttta 44714005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 2144597 - 2144664
Alignment:
Q  93 tccactccattgtttgggaagttgacggaatggaatgtattataattttttattctaattttaacctt 160  Q
    |||| |||||||||||| ||||||||||||||||||  ||||||| ||||||||| | ||||| ||||    
T  2144597 tccattccattgtttggaaagttgacggaatggaataaattataactttttattccatttttaccctt 2144664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 39439292 - 39439405
Alignment:
Q  50 cattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattataa-ttttttattct 148  Q
    |||||||| |||||||||||||| || |||| ||| |||| |  |||||||||||||||  ||||  |||||| ||||  | |||||| ||||||||||     
T  39439292 cattccattgtttggatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagtgaacggaacggaacatgttataacttttttattcc 39439391  T
Q  149 aattttaaccttta 162  Q
    ||||||| ||||||    
T  39439392 aattttacccttta 39439405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 35231288 - 35231351
Alignment:
Q  98 tccattgtttgggaagttgacggaatggaatgtattataa-ttttttattctaattttaacctt 160  Q
    |||||||||||| || ||||||||||||||||  |||||| |||||||||| ||||||| ||||    
T  35231288 tccattgtttggaaaattgacggaatggaatgagttataatttttttattccaattttaccctt 35231351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 23416721 - 23416808
Alignment:
Q  225 gcttcacatataagaatgatgcatccaaaatatgaactcgctgcaaattaaaacatggatgttttattatctacttctaatgatgaaa 312  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  23416721 gcttcacatataagaatgatgcatctagaatatgaactcgctgcaaattaaaacaaggatgttttattatctacctctaatgatgaaa 23416808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 23416578 - 23416647
Alignment:
Q  96 actccattgtttgggaagttgacggaatggaatgtattataattttttattctaattttaacctttattt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23416578 actccattgtttgggaagttgacggaatggaatgtattataattttttattccaattttaacctttattt 23416647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 28300776 - 28300843
Alignment:
Q  93 tccactccattgtttgggaagttgacggaatggaatgtattataattttttattctaattttaacctt 160  Q
    |||| |||||||||||| ||||||||||||||||||  ||||||| ||||||||| | ||||| ||||    
T  28300776 tccattccattgtttggaaagttgacggaatggaataaattataactttttattccatttttaccctt 28300843  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 19848550 - 19848460
Alignment:
Q  32 ggaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaa 122  Q
    |||||||||  |||||| |||||||| ||||||||| || | ||||||||| | |||  | |||| |||||||||||| ||||| ||||||    
T  19848550 ggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaa 19848460  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 36656814 - 36656891
Alignment:
Q  32 ggaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgg 109  Q
    |||||||||| || |||||||||||| | |||||||||| | || |||| | | |||||| ||| |||||||||||||    
T  36656814 ggaatggaacaaaaattacattccattgcttggatattttatgacggaatggaactaactttccgctccattgtttgg 36656891  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 12634119 - 12634051
Alignment:
Q  98 tccattgtttgggaagttgacggaatggaatgtattataa-ttttttattctaattttaacctttattt 165  Q
    |||||||||||| |||| ||||||| |||||| |||||||  ||||||||| |||| || |||||||||    
T  12634119 tccattgtttggaaagtcgacggaacggaatgaattataacatttttattccaattataccctttattt 12634051  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 34924020 - 34924164
Alignment:
Q  17 ggaatggaacagagcggaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttg 116  Q
    |||||||||||||   ||||||||  |||||| |||||||| ||||||||| || | ||||||||||| |||  | |||| |||||||||||| |||||     
T  34924020 ggaatggaacagaattgaatggaataaagatttcattccattgtttggatactttatgatggaacgaaactagttttccattccattgtttggaaagtta 34924119  T
Q  117 acggaatggaatgtattataa-ttttttattctaattttaacctt 160  Q
    |||||| |||| |  |||||| |||||||||| ||||||| ||||    
T  34924120 acggaacggaacgagttataacttttttattccaattttaccctt 34924164  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 41222943 - 41223087
Alignment:
Q  17 ggaatggaacagagcggaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttg 116  Q
    |||||||||| || ||||||||||  |||||| |||||||| ||||||||| || | ||||||||| | |||  | |||| |||||||||||| |||||     
T  41222943 ggaatggaacggaacggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagtta 41223042  T
Q  117 acggaatggaatgtattataa-ttttttattctaattttaacctt 160  Q
    |||||| |||| |  |||||| |||||||||| ||||||| ||||    
T  41223043 acggaacggaacgagttataacttttttattccaattttaccctt 41223087  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 48085321 - 48085202
Alignment:
Q  46 attacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattataa-tttttta 144  Q
    |||||||||||| |||||||||||| ||||||||| |||||||| | |||| ||| |||||||  || | ||||||| |||||  ||||||| |||||||    
T  48085321 attacattccattgtttggatattt-acgatggaatgaagctaattttccattcctttgtttgaaaaatcgacggaacggaattaattataactttttta 48085223  T
Q  145 ttctaattttaacctttattt 165  Q
    ||| ||||||| |||||||||    
T  48085222 ttccaattttaccctttattt 48085202  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 50859516 - 50859398
Alignment:
Q  43 aagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattataa-tttt 141  Q
    ||||||||||||||| ||||||||||||   || |||| ||| |||| |  |||||||||| ||||| |||| ||||||||||||||  |||||| ||||    
T  50859516 aagattacattccattgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtggacggaatggaatgagttataactttt 50859417  T
Q  142 ttattctaattttaacctt 160  Q
    |||||| | ||||| ||||    
T  50859416 ttattccatttttaccctt 50859398  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 31229060 - 31228992
Alignment:
Q  98 tccattgtttgggaagttgacggaatggaatgtattataa-ttttttattctaattttaacctttattt 165  Q
    |||||||||||| |||||||||||| ||||||  ||||||  ||||||||| ||||||| | |||||||    
T  31229060 tccattgtttggaaagttgacggaacggaatgagttataacatttttattccaattttaccttttattt 31228992  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 11617939 - 11617827
Alignment:
Q  50 cattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattataattttttattcta 149  Q
    |||||||| ||||| |||||||| || |||| ||| |||| |  |||||||||||||||| ||||  |||||| ||||  | |||||| ||||||||| |    
T  11617939 cattccattgtttgaatatttcaagacggaatgaaactaatttcccactccattgtttggaaagtgaacggaacggaacatgttataactttttattcca 11617840  T
Q  150 attttaaccttta 162  Q
    |||||| ||||||    
T  11617839 attttacccttta 11617827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 7505344 - 7505436
Alignment:
Q  74 gatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattata-attttttattctaattttaacctttattt 165  Q
    ||||||| | |||||| | |||| |||||||||||  |||||||||||| ||||||  |||||  |||||||||| ||||||| | |||||||    
T  7505344 gatggaatggagctaattttccattccattgtttgaaaagttgacggaacggaatgagttatatcttttttattccaattttaccttttattt 7505436  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 57750 - 57622
Alignment:
Q  33 gaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtat 132  Q
    ||||||||  |||||| |||||||| ||||||||| || | ||||||||| | |||  | |||| |||||||||||| ||||| |||||| |||| |  |    
T  57750 gaatggaataaagatttcattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaacggaacgagt 57651  T
Q  133 tataa-ttttttattctaattttaacctt 160  Q
    ||||| |||||||||  ||||||| ||||    
T  57650 tataacttttttatttcaattttaccctt 57622  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 43496 - 43612
Alignment:
Q  50 cattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattataa-ttttttattct 148  Q
    |||||||| |||||||||||| |||| |||| ||| |||| |   || |||||||||||| |||| ||| ||| ||||||  |||||| |||||||||      
T  43496 cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttc 43595  T
Q  149 aattttaacctttattt 165  Q
    ||||||| |||||||||    
T  43596 aattttaccctttattt 43612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 77216 - 77332
Alignment:
Q  50 cattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgtattataa-ttttttattct 148  Q
    |||||||| |||||||||||| |||| |||| ||| |||| |   || |||||||||||| |||| ||| ||| ||||||  |||||| |||||||||      
T  77216 cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttc 77315  T
Q  149 aattttaacctttattt 165  Q
    ||||||| |||||||||    
T  77316 aattttaccctttattt 77332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 12154 - 12221
Alignment:
Q  93 tccactccattgtttgggaagttgacggaatggaatgtattataattttttattctaattttaacctt 160  Q
    |||| |||||| ||||| ||||||||||||||||||  ||||||| ||||||||| | ||||| ||||    
T  12154 tccattccattatttggaaagttgacggaatggaataaattataactttttattccatttttaccctt 12221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 10144827 - 10144760
Alignment:
Q  93 tccactccattgtttgggaagttgacggaatggaatgtattataattttttattctaattttaacctt 160  Q
    |||| |||||| ||||| ||||||||||||||||||  ||||||| ||||||||| | ||||| ||||    
T  10144827 tccattccattatttggaaagttgacggaatggaataaattataactttttattccatttttaccctt 10144760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 6193219 - 6193086
Alignment:
Q  32 ggaatggaacgaagattacattccatcgtttggatatttcacgatggaacgaagctaactgtccactccattgtttgggaagttgacggaatggaatgta 131  Q
    ||||| |||| |||||| |||||||| ||||| ||| ||||  ||||| || | |||| | |||||||  |||||||   ||| ||||||| |||||| |    
T  6193219 ggaatagaacaaagatttcattccattgtttgtatacttcataatggagcggaactaattttccactcagttgtttgaatagtggacggaacggaatg-a 6193121  T
Q  132 ttata-attttttattctaattttaacctttattt 165  Q
    ||||| ||||||||||  |||||||||||||||||    
T  6193120 ttatatattttttatttcaattttaacctttattt 6193086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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