View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_high_2 (Length: 534)
Name: NF9926_high_2
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 16 - 530
Target Start/End: Complemental strand, 1886347 - 1885833
Alignment:
| Q |
16 |
ttaacatcttatcaaattgtttctgcaaattttccatatcattttgaagctctaagtacttagctttcacactctctagctcaaactttagtgtgttgac |
115 |
Q |
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| T |
1886347 |
ttaacatcttatcaaattgtttctgcaaattttccatatcattttgaagctctaagtacttagctttcacactctccagctcaaactttagtgtgttgac |
1886248 |
T |
|
| Q |
116 |
atcttttttagcagttgtccatccttcttggaatgattgtggtgtcgcctcgagaagtgtttttcggtttgtaaccattggttgagtaaaggattcaaca |
215 |
Q |
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| T |
1886247 |
atcttttttagcagttgtccatccttcttggaatgattgtggtgtcgcctcgagaagtgtttttcggtttgtaaccattggttgagtaaaggattcaaca |
1886148 |
T |
|
| Q |
216 |
tctttcaaagaagggttggatagtgcagtacttatctttacctgttctgcaaataggacttgcacaactaccctcaatggaagcctttcattttgtgcag |
315 |
Q |
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| T |
1886147 |
tctttcaaagaagggttggatagtgcagtacttatctttacctgttctgcaaataggacttgcacaactaccctcaatggaagcctttcattttgtgcag |
1886048 |
T |
|
| Q |
316 |
catgcatgcatgcatcaattgagagtttctggcaatccattacgcggcagagtcgcttcctttcatgctcagaaagtgttggatgtgcctgttagtttac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1886047 |
catgcatgcatgcatcaattgagagtttctggcaatccattacgcggcagagtcgcttcctttcatgctcagaaagtgttggatgtgcctgttagtttac |
1885948 |
T |
|
| Q |
416 |
ttcactgataagaaatctagcagcagaaatctaatgtaataaaatttaagctgagctaccatacattcatcatcaatatacttttgatcctaatatttga |
515 |
Q |
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| T |
1885947 |
ttcactgataagaaatccagcagcagaaatctaatgtaataaaatttaagctgagctaccatacattcatcatcaatatacttttgatcctaatatttga |
1885848 |
T |
|
| Q |
516 |
gtgaaccaccaaagt |
530 |
Q |
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| T |
1885847 |
gtgaatcaccaaagt |
1885833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 35 - 409
Target Start/End: Original strand, 37213076 - 37213453
Alignment:
| Q |
35 |
tttctgcaaattttccatatcattttgaagctctaagtacttagctttcacactctctagctcaaactttagtgtgttgacatcttttttagcagttgtc |
134 |
Q |
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|||||||| |||||||||||||| ||||||||| | ||||| | |||||||||||| || |||||||||| |||||| | ||||| || || |||||| |
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| T |
37213076 |
tttctgcagattttccatatcatgttgaagctccagatactttgttttcacactctcaagttcaaactttaatgtgttaatgtctttctttgctgttgtc |
37213175 |
T |
|
| Q |
135 |
catccttcttggaatgattgtggtgtcgcctcgagaagtgtttttcggtttgtaaccattggttgagtaaag-gattcaaca---tctttcaaagaaggg |
230 |
Q |
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|||||||||||||| ||||| |||||| | |||||||| ||||| | |||||| ||||||||||| ||| | ||||||||| |||| | ||| | |
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| T |
37213176 |
catccttcttggaaagattgcggtgtcccttcgagaagcgttttcctgtttgttaccattggttg-gtactgagattcaacactgccttttagagagctg |
37213274 |
T |
|
| Q |
231 |
ttggatagtgcagtacttatctttacctgttctgcaaataggacttgcacaactaccctcaatggaagcctttcattttgtgcagcatgcatgcatgcat |
330 |
Q |
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|||| ||||||| | ||||||||||| || || | |||| |||||||| |||||||| ||||| || | ||| ||||| || || |||||||| || | |
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| T |
37213275 |
ttggctagtgcattgcttatctttacttgctcagagaataaaacttgcactactacccttaatggcagtcgttcgttttgagctgcgtgcatgcaggcgt |
37213374 |
T |
|
| Q |
331 |
caattgagagtttctggcaatccattacgcggcagagtcgcttcctttcatgctcagaaagtgttggatgtgcctgtta |
409 |
Q |
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|||| |||||||| || ||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||| |
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| T |
37213375 |
caatggagagtttttgacaatccattacacggcagagacgcttcctttcgtgctcagttagtgttggatgtgcctgtta |
37213453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 37860913 - 37860873
Alignment:
| Q |
303 |
tcattttgtgcagcatgcatgcatgcatcaattgagagttt |
343 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
37860913 |
tcattttgtgcagcatgtatgcatgcatcaagtgagagttt |
37860873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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