View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9926_high_23 (Length: 239)
Name: NF9926_high_23
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 22881584 - 22881750
Alignment:
| Q |
1 |
tatttttatttccatatctgctgtgtagaaaaaatatgtgagcagcacatttatttttaatatataataactaaaaatagtgcttaaatagtgtannnnn |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22881584 |
tatttttatttccatatctgttgtgtagaaaaaatatgtgagcagcacatttatttttaacatataataactaaaaatagtgcttaaatagtgta-tttt |
22881682 |
T |
|
| Q |
101 |
nnatacagtaactcttgttgaatctctataaataggtttgcataaaaagaccatttatcttgtgtttt |
168 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22881683 |
ttatacagtaacttttgttgaatctctagaaataagtttgcataaaaagaccatttatcttgtgtttt |
22881750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 22881770 - 22881807
Alignment:
| Q |
188 |
cagttccattatcctcaatgcaccattgacatgtattt |
225 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
22881770 |
cagtttcattatcctcaaggcaccattgacatgtattt |
22881807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University