View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_high_27 (Length: 227)
Name: NF9926_high_27
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_high_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40328288 - 40328514
Alignment:
| Q |
1 |
aatggaacaacacacaacagcttgaaatcaaaagtaattaatcaaacgtaatnnnnnnnnnnggcactagtattgaattggctttgtcacaatcccttaa |
100 |
Q |
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| T |
40328288 |
aatggaacaacacacaacagcttgaaatcaaaagtaattaatcaaacgtaataaaaaaaaaaagcactagtattgaattggctttgtcacaatcccttaa |
40328387 |
T |
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| Q |
101 |
acaaacacttccttcctgtgccactcagaaagttacacatccacaaacctaaaatagaatggtcatctattacttttctttctttctacaatataccctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40328388 |
acaaacacttccttcctgtgccactcagaaagttacacatccacaaacctaaaatagaatggtcatctattacttttctttctttctataatataccctc |
40328487 |
T |
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| Q |
201 |
tatgctctatactcaaacattgtttaa |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
40328488 |
tatgctctatactcaaacattgtttaa |
40328514 |
T |
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