View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_high_28 (Length: 216)
Name: NF9926_high_28
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 48591250 - 48591082
Alignment:
| Q |
18 |
gaggagatacaaatgaaaatgaaccgcagaaacatatataccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaaaatgatgttc |
117 |
Q |
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| T |
48591250 |
gaggagatacaaatgaaaatgagccgtagaaacgtatgtaccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaatatgatgttc |
48591151 |
T |
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| Q |
118 |
gaactattctttttagggaagtgagtgatgttagaatattttattatataattatatgtgttgtgaatt |
186 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48591150 |
gaactattctttttaggggagtgagtgatgttagaatattttattatataattatatgtgttgtgaatt |
48591082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 48600945 - 48600777
Alignment:
| Q |
18 |
gaggagatacaaatgaaaatgaaccgcagaaacatatataccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaaaatgatgttc |
117 |
Q |
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|||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48600945 |
gaggagatacaaatgaaaatgagccgtagaaacgtatgtaccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaatatgatgttc |
48600846 |
T |
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| Q |
118 |
gaactattctttttagggaagtgagtgatgttagaatattttattatataattatatgtgttgtgaatt |
186 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48600845 |
gaactattctttttaggggagtgagtgatgttagaatattttattatataattatatgtgttgtgaatt |
48600777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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