View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_high_3 (Length: 518)
Name: NF9926_high_3
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 32583493 - 32583986
Alignment:
| Q |
18 |
ataatctaccaacagagattgaaactcaagtcact--attaaggcgagcataaggtccaatcgttttgtgccaaattgtggttgccccnnnnnnnncctt |
115 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32583493 |
ataatctaccaacagagattcaaactcaagtcacacaattaaggcgagcataaggtccaatcgttttgtgccaaattgtggttgccttttttttttcctt |
32583592 |
T |
|
| Q |
116 |
tcacgagtcnnnnnnngatcaaacggtacattttctacatacacattcttttattacaccccaagtattgatcaattagcacatacaaccttaagactca |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32583593 |
tcacgagtcaaaataagatcaaacggtacattttctacatacacattcttttattacaccccaagtattgatcaattagcacatacaaccttaagactca |
32583692 |
T |
|
| Q |
216 |
aggctaattgcttgttgattaattaggtgagtcttgcatctaaagtgcttctagataattatatgacaatatcaaatggcaactcagtcaatctccaggt |
315 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32583693 |
aggctaattgcttgttgattaattaggtgggtcttgcatctaaagtgcttctagataattatatgacaatatcaaatgacaactcagtcaatctccaggt |
32583792 |
T |
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| Q |
316 |
taattatgctctctgtcttgttggaggggttgctcacaaaagttagtgtggacacacctgctcagttgacttctaataataattttttactaaaat---- |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32583793 |
taattatgctctctgtcttgttggaggggttgctcacaaaagttagtgtggactcacctgctcagttgacttctaataataataatttactaaaatggat |
32583892 |
T |
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| Q |
412 |
---------------gtaacaatggtacataagccagataaagtttattttattcctttggtttatgttgtattgtatctgtcaaaagcaatta |
490 |
Q |
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| T |
32583893 |
tctaaaatgtaacaagtaacaatggtacataagccagataaagtttattttattcctttggtttatgttgtattgtatctgtcgaaagcaatta |
32583986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 511
Target Start/End: Original strand, 32585129 - 32585158
Alignment:
| Q |
482 |
aagcaattattccatattttccctttgctt |
511 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32585129 |
aagcaattattccatattttccctttgctt |
32585158 |
T |
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