View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_high_5 (Length: 408)
Name: NF9926_high_5
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 1542555 - 1542933
Alignment:
| Q |
11 |
cagagatgaaattatcgatggttatatcaaaacattcgcggaggttatcggaaagtaatcatcataatatataaatgcatgatttattcttttgtctatg |
110 |
Q |
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| T |
1542555 |
cagagatgaaattatcgatggttatatcaaaacattcgcggaggttatcggaaagtaatcatcataatatataaatgcatgatttattcttttgtctatg |
1542654 |
T |
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| Q |
111 |
tgggttttatctctataacattgacatgtttacatgtttaccgggattgacttgtcactgtgttttgtcatcttcatgttggtgctgcatagggttttat |
210 |
Q |
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| T |
1542655 |
tgggttttatctctataacattgacatgtttacatgtttaccgggattgacttgtcactgtgttttgtcatgttcatgttggtgctgcatagggttttat |
1542754 |
T |
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| Q |
211 |
tgatatatgaagcgcagacacatatacgaac-accatacacaacactgacgccaaatatgagatcgacacctataataatttaagaaaataattgatttg |
309 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
1542755 |
tgatatatgaagcacagacacatatacgaacaaccatacacaacactgacgccaaatatgatgtcgacacctataataatttaagaaaataatttatttg |
1542854 |
T |
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| Q |
310 |
aatatatataatcacatgtgataccgacacacgttccatttgaaatgttggtgctattgattccaaataatatatgtgaatgg |
392 |
Q |
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| T |
1542855 |
a----atataatcacatgtgataccgacacacgttccatttgaaatgttggtgctattgattccaaataatatatgtgaatgg |
1542933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 32424443 - 32424516
Alignment:
| Q |
9 |
agcagagatgaaattatcgatggttatatcaaaacattcgcggaggttatcggaaagtaatcatcataatatat |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
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| T |
32424443 |
agcagagatgaaattatcgatggttatatcaaaacattcgtggaggttatcggaaagtaataaccataatatat |
32424516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 32425031 - 32425088
Alignment:
| Q |
335 |
gacacacgttccatttgaaatgttggtgctattgattccaaataatatatgtgaatgg |
392 |
Q |
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||||| ||||||||| |||||||||||||||||||||| ||||||| | ||||||||| |
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| T |
32425031 |
gacacgcgttccattagaaatgttggtgctattgattctaaataatgtctgtgaatgg |
32425088 |
T |
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