View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9926_high_6 (Length: 389)

Name: NF9926_high_6
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9926_high_6
NF9926_high_6
[»] chr2 (5 HSPs)
chr2 (86-373)||(13111921-13112207)
chr2 (1-47)||(13111008-13111054)
chr2 (245-303)||(12061247-12061305)
chr2 (281-373)||(18038655-18038748)
chr2 (281-363)||(27483842-27483924)
[»] chr1 (2 HSPs)
chr1 (236-373)||(35896413-35896550)
chr1 (281-352)||(19227788-19227859)
[»] scaffold0329 (1 HSPs)
scaffold0329 (283-367)||(4630-4714)
[»] chr3 (2 HSPs)
chr3 (281-356)||(5797951-5798026)
chr3 (215-339)||(9796527-9796649)
[»] chr8 (1 HSPs)
chr8 (281-355)||(19712014-19712088)
[»] chr4 (2 HSPs)
chr4 (281-339)||(19053571-19053629)
chr4 (307-372)||(13977063-13977128)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 86 - 373
Target Start/End: Original strand, 13111921 - 13112207
Alignment:
Q  86 atactatacgtataattgatttgtacactacacagcgctgaatctagttcgagacattgtcattccacgctgctcaaacgttgtctaaacggaaaatatt 185  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13111921 atactatacgtataagtgatttgtacactacacagcgctgaatctagttcgagacattgtcactccacgctgctcaaacgttgtctaaacggaaaatatt 13112020  T
Q  186 tgggtaacatttatgtttagtggaattagtgatgttgaaacgaaatagatttttgtaggatgtctctgaattttttatgaaaataaagtatcaagagaac 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || |||||    
T  13112021 tgggtaacatttatgtttagtggaattagtgatgttgaaacgaaataga-ttttgtaggatgtctctgcattttttatgaaaataaagtattaaaagaac 13112119  T
Q  286 aattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaacat 373  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13112120 aattagatatactaatgtatgttcaagtgtgggagaccataaactaaaatttaaagtattaaatcaagttttggttctagaagaacat 13112207  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13111008 - 13111054
Alignment:
Q  1 tataaaaggatcgaatgactgtaaacgtataagggggacgtggctaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13111008 tataaaaggatcgaatgactgtaaacgtataagggggacgtggctaa 13111054  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 12061305 - 12061247
Alignment:
Q  245 atgtctctgaattttttatgaaaataaagtatcaagagaacaattagatatattaatgt 303  Q
    ||||||||||| |||| |||| |||||||||| || ||||||||||||||| |||||||    
T  12061305 atgtctctgaagttttgatgataataaagtatgaaaagaacaattagatatgttaatgt 12061247  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 373
Target Start/End: Complemental strand, 18038748 - 18038655
Alignment:
Q  281 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaacta-aaatttaaagtattaaatcaagttttagttctagaagaacat 373  Q
    ||||||||| |||||  |||||||| |||||||||||| ||||||  |||| |||||  | ||||||||||||||||| ||| | |||||||||    
T  18038748 agaacaattggatatgctaatgtatgttcaagtgtgcgtgaccattgactagaaattatatgtattaaatcaagttttggttatggaagaacat 18038655  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 363
Target Start/End: Original strand, 27483842 - 27483924
Alignment:
Q  281 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttct 363  Q
    ||||||||| ||||||||||||| | |||||||||||  ||||||||| | |||||  || | | |||||||||||| |||||    
T  27483842 agaacaatttgatatattaatgtgtgttcaagtgtgcaggaccataaaattaaattctaattctaaaatcaagttttggttct 27483924  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 35896550 - 35896413
Alignment:
Q  236 ttttgtaggatgtctctgaattttttatgaaaataaagtatcaagagaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaat 335  Q
    |||||||  |||| |||||| |||| |||| || ||||||| || |||||||||  |||| ||||||||| ||||||||||   ||||| ||||||||||    
T  35896550 ttttgtataatgtatctgaagttttgatgataagaaagtattaaaagaacaattgaatatgttaatgtatgttcaagtgtgtaggaccacaaactaaaat 35896451  T
Q  336 ttaaagtattaaatcaagttttagttctagaagaacat 373  Q
    | || ||||||||| |||||||||| ||  ||||||||    
T  35896450 taaatgtattaaataaagttttagtactgaaagaacat 35896413  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 19227859 - 19227788
Alignment:
Q  281 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaa 352  Q
    |||||||||| |||||||||| ||| |||||||||||  ||||||||||||||||| || ||||||||||||    
T  19227859 agaacaattaaatatattaatatatgttcaagtgtgcaggaccataaactaaaattcaatgtattaaatcaa 19227788  T

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Target: scaffold0329 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 367
Target Start/End: Complemental strand, 4714 - 4630
Alignment:
Q  283 aacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaa 367  Q
    ||||||| |||||  |||| ||| |||||||||||  ||||||| ||||||||| | |||||||| ||||||||| |||||||||    
T  4714 aacaattggatatgctaatatattttcaagtgtgcaggaccatatactaaaattcatagtattaagtcaagttttcgttctagaa 4630  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 5797951 - 5798026
Alignment:
Q  281 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttt 356  Q
    ||||||||| ||||| ||||||||| |||||||||||   | ||||||||||||||| | |||| |||||||||||    
T  5797951 agaacaattggatatgttaatgtatgttcaagtgtgcagaatcataaactaaaatttcatgtatcaaatcaagttt 5798026  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 339
Target Start/End: Complemental strand, 9796649 - 9796527
Alignment:
Q  215 tgatgttgaaacgaaatagatttttgtaggatgtctctgaattttttatgaaaataaagtatcaagagaacaattagatatattaatgtatattcaagtg 314  Q
    |||||||| ||| |||| |||||| |||  || |||||||| |||| |||| |||||||||| || ||||||||| ||||| ||||| ||| ||||||||    
T  9796649 tgatgttggaacaaaattgatttt-gtacaatttctctgaagttttgatgataataaagtattaa-agaacaattggatatgttaatatatgttcaagtg 9796552  T
Q  315 tgcgagaccataaactaaaatttaa 339  Q
    |||  || |||| | ||||||||||    
T  9796551 tgcaggatcatagattaaaatttaa 9796527  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 19712014 - 19712088
Alignment:
Q  281 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagtt 355  Q
    ||||||||||||||| ||||| ||| ||||||| ||| |||||||| ||||||| | || |||| || |||||||    
T  19712014 agaacaattagatatgttaatatatgttcaagtatgcaagaccatacactaaaactcaatgtataaattcaagtt 19712088  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 19053629 - 19053571
Alignment:
Q  281 agaacaattagatatattaatgtatattcaagtgtgcgagaccataaactaaaatttaa 339  Q
    |||||||||||||||  |||| ||| |||||||||||  ||||||||| ||||||||||    
T  19053629 agaacaattagatatgctaatatatgttcaagtgtgctggaccataaattaaaatttaa 19053571  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 13977063 - 13977128
Alignment:
Q  307 ttcaagtgtgcgagaccataaactaaaatttaaagtattaaatcaagttttagttctagaagaaca 372  Q
    ||||||| ||| |||||||| | | ||||| |||||||||||||||||||| |||||  |||||||    
T  13977063 ttcaagtatgcaagaccatataattaaattcaaagtattaaatcaagttttggttctgtaagaaca 13977128  T

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