View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_high_8 (Length: 382)
Name: NF9926_high_8
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 14781874 - 14781512
Alignment:
| Q |
1 |
tattatgttatagtctgtgaaaaatcaattgtaaagtgtgaagttctagttttactgttgatttgaaaatatttcaacccaacaattgaacttgatggag |
100 |
Q |
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| T |
14781874 |
tattatgttatagtctgtgaaaaatcaattgtaaagtgtgaagttctagttttaccgttgatttgaaaatatttcaacccaacaattgaacttgatggag |
14781775 |
T |
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| Q |
101 |
caatctatgatataagtttgattattaagtttttagttgataggtttaaaataacaaacacgtagtcctaaatcgaataaatgggcgaaagggaatattg |
200 |
Q |
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| T |
14781774 |
caatctatgatataagtttgattattaagtttttagttgataggtttaaaataacaaacacgtagtcctaaatcgaataaatgggcgaaagggaatatta |
14781675 |
T |
|
| Q |
201 |
cttgagattgatacatcgttttttccacgttgccagtaagcagtccttggtgcctgatatgccaccccaagcaacatgatacttagtcttgtagattgag |
300 |
Q |
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| T |
14781674 |
cttgagattgatacatcgttttttccacgttgccaataagcagtccttggtgcctgatatgccaccccaagcagcatgatacttagtcttgtagattgag |
14781575 |
T |
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| Q |
301 |
ttgtgtagagtagatagtcattgtttagtaggcagttagtatttctataatcagagggtctacg |
364 |
Q |
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| T |
14781574 |
ttgtgtagagtagatagtcattgtttagta-gcagttagtatttctataatcaaagggtctacg |
14781512 |
T |
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