View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9926_low_11 (Length: 375)

Name: NF9926_low_11
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9926_low_11
NF9926_low_11
[»] scaffold1526 (2 HSPs)
scaffold1526 (10-124)||(576-690)
scaffold1526 (161-233)||(727-799)
[»] chr8 (2 HSPs)
chr8 (10-124)||(44496089-44496203)
chr8 (161-233)||(44495980-44496052)
[»] chr2 (2 HSPs)
chr2 (45-124)||(3378841-3378920)
chr2 (161-233)||(3378732-3378804)
[»] scaffold0642 (2 HSPs)
scaffold0642 (161-233)||(4578-4650)
scaffold0642 (85-124)||(4687-4726)
[»] scaffold0345 (2 HSPs)
scaffold0345 (161-233)||(14490-14562)
scaffold0345 (85-124)||(14599-14638)
[»] scaffold0105 (2 HSPs)
scaffold0105 (161-233)||(24419-24491)
scaffold0105 (85-124)||(24343-24382)
[»] scaffold0016 (2 HSPs)
scaffold0016 (16-120)||(53268-53365)
scaffold0016 (184-217)||(53461-53494)
[»] chr4 (2 HSPs)
chr4 (10-57)||(28335630-28335677)
chr4 (10-57)||(44787585-44787632)


Alignment Details
Target: scaffold1526 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 576 - 690
Alignment:
Q  10 aagcagagaataaaacacatatgattaaatcaaaccatcattggttacctagatatcaacttagagcttagatatcaacaacaaagaggagtcagtcaag 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  576 aagcaaagaataaaacacatatgattaaatcaaaccatcattggttacctagatatcaacttagagcttagatatcaacaacaaagaggagtcagtcaag 675  T
Q  110 aatagagataagtat 124  Q
    |||||||||||||||    
T  676 aatagagataagtat 690  T

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Target: scaffold1526; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 727 - 799
Alignment:
Q  161 ggtaagatcgataaattgaacttattcattaaatttctaaattagtatgacccgtcatagagctgatcaaaat 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  727 ggtaagatcgataaattgaacttattcattaaatttctaaattagtatgacccgtcatagagctgatcaaaat 799  T

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Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 44496203 - 44496089
Alignment:
Q  10 aagcagagaataaaacacatatgattaaatcaaaccatcattggttacctagatatcaacttagagcttagatatcaacaacaaagaggagtcagtcaag 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44496203 aagcaaagaataaaacacatatgattaaatcaaaccatcattggttacctagatatcaacttagagcttagatatcaacaacaaagaggagtcagtcaag 44496104  T
Q  110 aatagagataagtat 124  Q
    |||||||||||||||    
T  44496103 aatagagataagtat 44496089  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 44496052 - 44495980
Alignment:
Q  161 ggtaagatcgataaattgaacttattcattaaatttctaaattagtatgacccgtcatagagctgatcaaaat 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44496052 ggtaagatcgataaattgaacttattcattaaatttctaaattagtatgacccgtcatagagctgatcaaaat 44495980  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 3378920 - 3378841
Alignment:
Q  45 catcattggttacctagatatcaacttagagcttagatatcaacaacaaagaggagtcagtcaagaatagagataagtat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378920 catcattggttacctagatatcaacttagagcttagatatcaacaacaaagaggagtcagtcaagaatagagataagtat 3378841  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 3378804 - 3378732
Alignment:
Q  161 ggtaagatcgataaattgaacttattcattaaatttctaaattagtatgacccgtcatagagctgatcaaaat 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378804 ggtaagatcgataaattgaacttattcattaaatttctaaattagtatgacccgtcatagagctgatcaaaat 3378732  T

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Target: scaffold0642 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 4650 - 4578
Alignment:
Q  161 ggtaagatcgataaattgaacttattcattaaatttctaaattagtatgacccgtcatagagctgatcaaaat 233  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4650 ggtaagatcgataaattgaacttattcattaaatttctaaattcgtatgacccgtcatagagctgatcaaaat 4578  T

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Target: scaffold0642; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 4726 - 4687
Alignment:
Q  85 caacaacaaagaggagtcagtcaagaatagagataagtat 124  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4726 caacaacaaagaggagtcagtcaagaatagagataagtat 4687  T

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Target: scaffold0345 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 14562 - 14490
Alignment:
Q  161 ggtaagatcgataaattgaacttattcattaaatttctaaattagtatgacccgtcatagagctgatcaaaat 233  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14562 ggtaagatcgataaattgaacttattcattaaatttctaaattcgtatgacccgtcatagagctgatcaaaat 14490  T

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Target: scaffold0345; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 14638 - 14599
Alignment:
Q  85 caacaacaaagaggagtcagtcaagaatagagataagtat 124  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14638 caacaacaaagaggagtcagtcaagaatagagataagtat 14599  T

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Target: scaffold0105 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 24419 - 24491
Alignment:
Q  161 ggtaagatcgataaattgaacttattcattaaatttctaaattagtatgacccgtcatagagctgatcaaaat 233  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24419 ggtaagatcgataaattgaacttattcattaaatttctaaattcgtatgacccgtcatagagctgatcaaaat 24491  T

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Target: scaffold0105; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 24343 - 24382
Alignment:
Q  85 caacaacaaagaggagtcagtcaagaatagagataagtat 124  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24343 caacaacaaagaggagtcagtcaagaatagagataagtat 24382  T

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Target: scaffold0016 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 53268 - 53365
Alignment:
Q  16 agaataaaacacatatgattaaatcaaaccatcattggttacctagatatcaacttagagcttagatatcaacaacaaagaggagtcagtcaagaataga 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||       |||||||||||||||||||||||||||||| |||||||||| |||    
T  53268 agaataaaacacatatgattaaatcaaaccgtcattggttacctggat-------tagagcttagatatcaacaacaaagaggagccagtcaagaacaga 53360  T

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Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 53461 - 53494
Alignment:
Q  184 attcattaaatttctaaattagtatgacccgtca 217  Q
    ||||||||||||||||||||||||||||| ||||    
T  53461 attcattaaatttctaaattagtatgaccagtca 53494  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 28335630 - 28335677
Alignment:
Q  10 aagcagagaataaaacacatatgattaaatcaaaccatcattggttac 57  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  28335630 aagcaaagaataaaacacatgtgattaaatcaaaccatcattagttac 28335677  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 44787585 - 44787632
Alignment:
Q  10 aagcagagaataaaacacatatgattaaatcaaaccatcattggttac 57  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  44787585 aagcaaagaataaaacacatgtgattaaatcaaaccatcattagttac 44787632  T

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