View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_low_12 (Length: 365)
Name: NF9926_low_12
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 117 - 287
Target Start/End: Complemental strand, 40328763 - 40328593
Alignment:
| Q |
117 |
ataagcgcttacgtggtggaagggctgatgtattcatgcatctttccagaagcaccaaagagaataagggaaacttgagcatcacaaagaacacttattt |
216 |
Q |
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| T |
40328763 |
ataagcgcttacgtggtagaagggctgatgtattcatgcatctttccagaagcaccaaagagaataagggaaacttgagcatcacaaagaacacttattt |
40328664 |
T |
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| Q |
217 |
cctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagttttcaatc |
287 |
Q |
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| T |
40328663 |
cctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagttttcaatc |
40328593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 40328862 - 40328828
Alignment:
| Q |
18 |
ctctctggtatctgtccagaatatcaatcaacctt |
52 |
Q |
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| T |
40328862 |
ctctctggtatctgtccagaatatcaatcaacctt |
40328828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 125 - 287
Target Start/End: Original strand, 10225378 - 10225540
Alignment:
| Q |
125 |
ttacgtggtggaagggctgatgtattcatgcatctttccagaagcaccaaagagaataagggaaacttgagcatcacaaagaacacttatttcctttgct |
224 |
Q |
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| T |
10225378 |
ttacgtggtagaagggctaatgtattcatgcatttttccagaaggagcaatgatgatagtggaaacttgagcatcacatagaacattgatttctttagct |
10225477 |
T |
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| Q |
225 |
ttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagttttcaatc |
287 |
Q |
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| T |
10225478 |
ttctttaaaatcccgctttttctctttgaatatgtaacttgtctattgcttgagttctcaatc |
10225540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 8201190 - 8201113
Alignment:
| Q |
194 |
agcatcacaaagaacacttatttcctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgtt |
271 |
Q |
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| T |
8201190 |
agcatcacaaagaacactaagttcatgtgctttcttgaatataccattccttctctttgagtatgtcacttgcctgtt |
8201113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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