View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9926_low_14 (Length: 361)

Name: NF9926_low_14
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9926_low_14
NF9926_low_14
[»] chr3 (4 HSPs)
chr3 (182-354)||(33454875-33455046)
chr3 (252-301)||(44868068-44868117)
chr3 (252-301)||(47737649-47737698)
chr3 (252-301)||(50675101-50675150)
[»] chr7 (3 HSPs)
chr7 (182-302)||(29060068-29060188)
chr7 (21-113)||(29060257-29060349)
chr7 (252-301)||(27855626-27855675)
[»] chr1 (2 HSPs)
chr1 (182-302)||(48834426-48834546)
chr1 (21-113)||(48834615-48834707)
[»] chr5 (1 HSPs)
chr5 (316-354)||(35262461-35262499)
[»] chr8 (1 HSPs)
chr8 (252-301)||(7818535-7818584)
[»] chr6 (1 HSPs)
chr6 (252-301)||(13936616-13936665)
[»] chr4 (1 HSPs)
chr4 (252-301)||(37567450-37567499)
[»] chr2 (1 HSPs)
chr2 (252-301)||(10883348-10883397)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 182 - 354
Target Start/End: Complemental strand, 33455046 - 33454875
Alignment:
Q  182 ttcattgaaagtgaaagtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatctagtgttgagagtgcatgataacaac 281  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  33455046 ttcattgaaattgagagtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatatagtgttgagagtgcatgataacaat 33454947  T
Q  282 gtgttctttacttaatctaaccgttnnnnnnnnnctttcccatggtaggaaacaattttcctttcctatgcta 354  Q
    |||||||||||||||||||||||||         ||||| |||||| ||||||||||||||||||| ||||||    
T  33454946 gtgttctttacttaatctaaccgtt-aaaaaaaactttctcatggtgggaaacaattttcctttcccatgcta 33454875  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 44868117 - 44868068
Alignment:
Q  252 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 301  Q
    |||||||||||||||| ||||| ||| ||  |||||||||||||||||||    
T  44868117 aatctagtgttgagagagcatgttaagaatatgttctttacttaatctaa 44868068  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 47737649 - 47737698
Alignment:
Q  252 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 301  Q
    |||||||||||||||| ||||||||| ||  ||||||| |||||||||||    
T  47737649 aatctagtgttgagagagcatgataagaatatgttcttcacttaatctaa 47737698  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 50675101 - 50675150
Alignment:
Q  252 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 301  Q
    |||||||||||||||||||||| ||| ||  ||||||| |||||||||||    
T  50675101 aatctagtgttgagagtgcatgttaataatatgttcttcacttaatctaa 50675150  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 29060188 - 29060068
Alignment:
Q  182 ttcattgaaagtgaaagtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatctagtgttgagagtgcatgataacaac 281  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  29060188 ttcattgaaagtgagtgtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatctagtgttgagagtgcatgataataat 29060089  T
Q  282 gtgttctttacttaatctaac 302  Q
     ||||||||||||||| ||||    
T  29060088 atgttctttacttaatttaac 29060068  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 29060349 - 29060257
Alignment:
Q  21 agtcatgaacttgttgtcaggatggtgaacaagtaagaataaggacacccttgattttcttttccttgatttattggttattgtgccatttga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  29060349 agtcatgaacttgttgtcaggatggtgaacaagtaagaataaggacacccttgattttctttttcttgatttattggttattgtgtcatttga 29060257  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 27855675 - 27855626
Alignment:
Q  252 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 301  Q
    |||||||||||||||| ||||||||| ||  ||||||| |||||||||||    
T  27855675 aatctagtgttgagagagcatgataagaatatgttcttcacttaatctaa 27855626  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 48834546 - 48834426
Alignment:
Q  182 ttcattgaaagtgaaagtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatctagtgttgagagtgcatgataacaac 281  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||     
T  48834546 ttcattgaaagtgagtgtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatctagtgttcagagtgcatgataataat 48834447  T
Q  282 gtgttctttacttaatctaac 302  Q
     ||||||||||||||||||||    
T  48834446 atgttctttacttaatctaac 48834426  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 48834707 - 48834615
Alignment:
Q  21 agtcatgaacttgttgtcaggatggtgaacaagtaagaataaggacacccttgattttcttttccttgatttattggttattgtgccatttga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  48834707 agtcatgaacttgttgtcaggatggtgaacaagtaagaataaggacacccttgattttctttttcttgatttattggttattgtgtcatttga 48834615  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 35262499 - 35262461
Alignment:
Q  316 ctttcccatggtaggaaacaattttcctttcctatgcta 354  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  35262499 ctttcccatggtaggaaacaattatcctttcccatgcta 35262461  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 7818584 - 7818535
Alignment:
Q  252 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 301  Q
    |||||||||||||||| ||||||||| ||  ||||||| |||||||||||    
T  7818584 aatctagtgttgagagagcatgataagaatatgttcttcacttaatctaa 7818535  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 13936616 - 13936665
Alignment:
Q  252 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 301  Q
    |||||||||||||||| ||||| ||| ||  |||||||||||||||||||    
T  13936616 aatctagtgttgagagagcatgttaagaatatgttctttacttaatctaa 13936665  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 37567450 - 37567499
Alignment:
Q  252 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 301  Q
    |||||||||||||||| ||||| ||| ||  |||||||||||||||||||    
T  37567450 aatctagtgttgagagagcatgttaagaatatgttctttacttaatctaa 37567499  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 10883397 - 10883348
Alignment:
Q  252 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 301  Q
    |||||||||||||||| ||||| ||| ||  |||||||||||||||||||    
T  10883397 aatctagtgttgagagagcatgttaagaatatgttctttacttaatctaa 10883348  T

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