View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_low_15 (Length: 360)
Name: NF9926_low_15
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 35906506 - 35906179
Alignment:
| Q |
18 |
gtgttttcacatcagaatcaacctacaaattccctattctgccaaataaacgttattggttaagactacatttttatccttctgtttacaacaatttgaa |
117 |
Q |
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| T |
35906506 |
gtgttttcacatcagaatcaacctacaaattccctattctaccaaataaacgttattggttaagactacatttttatccttctgtttacaacaatttgaa |
35906407 |
T |
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| Q |
118 |
cccatcggattcgtatttttctgtaacggcaaatggtgttacacttctcaacaattttagctcgtcgattacatgtcaagccttatctcaagcttatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35906406 |
cccatcggattcgtatttttctgtaacggcaaatggtgttgcacttctcaacaattttagctcatcgattacatgtcaagccttatctcaagcttatctt |
35906307 |
T |
|
| Q |
218 |
gatagagaatattcacttgcacctttgaattcaaatgttcttaatcttacttttaagccttctgataaacacagtggtgcttttgcttttattaatggta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35906306 |
gatagagaatattcacttgcacctttgaattcaaatgttcttaatcttacttttaagccttctgataaacacaatggtgcttttgcttttattaatggta |
35906207 |
T |
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| Q |
318 |
ttcaacttattcaaatgccggatttgtt |
345 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
35906206 |
ttcaacttattcaaatgccggatttgtt |
35906179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 345
Target Start/End: Original strand, 47622928 - 47623252
Alignment:
| Q |
21 |
ttttcacatcagaatcaacctacaaattccctattctgccaaataaacgttattggttaagactacatttttatccttctgtttacaacaatttgaaccc |
120 |
Q |
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|||||||||||||| |||| |||||||| | ||| ||| |||||||||||||| | || || || |||||||| || |||| | ||| ||||| |
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| T |
47622928 |
ttttcacatcagaaacaacatacaaatttaatgttcagcctgataaacgttattggctcaggctccacttttatccatccctttatggaactttcaaccc |
47623027 |
T |
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| Q |
121 |
atcggattcgtatttttctgtaacggcaaatggtgttacacttctcaacaattttagctcgtcgattacatgtcaagccttatctcaagcttatcttgat |
220 |
Q |
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|| ||||| ||||| ||||| | |||||||| |||| || |||| |||||| ||| | || || || ||||| ||| | || |||||||| |||| |
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| T |
47623028 |
ctccgattcatatttctctgtggctgcaaatgggattaccctcctcagcaatttcagcgcttctatcacttgtcaggccctctcacaagcttacattgac |
47623127 |
T |
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| Q |
221 |
agagaatattcacttgcacctttgaattcaaatgttcttaatcttacttttaagccttctgataaacacagtggtgcttttgcttttattaatggtattc |
320 |
Q |
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||||| ||||| ||||| |||||||||||| || | | | |||||| ||||| |||||||| || || | ||| |||||||||| || ||||| |||| |
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| T |
47623128 |
agagagtattctcttgctcctttgaattcagatactttgactcttacatttaaaccttctgacaagcaaaatgggacttttgctttcatcaatggaattc |
47623227 |
T |
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| Q |
321 |
aacttattcaaatgccggatttgtt |
345 |
Q |
| |
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|| | || |||||||| || ||||| |
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| T |
47623228 |
aattgatccaaatgcctgagttgtt |
47623252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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