View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9926_low_16 (Length: 357)

Name: NF9926_low_16
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9926_low_16
NF9926_low_16
[»] chr3 (1 HSPs)
chr3 (96-343)||(36383570-36383817)
[»] chr8 (3 HSPs)
chr8 (15-96)||(24876452-24876533)
chr8 (15-96)||(24880954-24881035)
chr8 (15-96)||(24886289-24886370)
[»] chr6 (2 HSPs)
chr6 (19-96)||(14087691-14087768)
chr6 (19-96)||(14092223-14092300)
[»] chr1 (2 HSPs)
chr1 (19-96)||(46454186-46454263)
chr1 (15-96)||(46461582-46461663)
[»] chr7 (3 HSPs)
chr7 (15-96)||(9955382-9955463)
chr7 (24-72)||(32213508-32213556)
chr7 (24-59)||(32213350-32213385)
[»] chr2 (2 HSPs)
chr2 (15-97)||(33681867-33681946)
chr2 (15-97)||(33698924-33699003)
[»] chr5 (1 HSPs)
chr5 (15-64)||(9360905-9360954)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 96 - 343
Target Start/End: Complemental strand, 36383817 - 36383570
Alignment:
Q  96 atttccattataccagcttccaaggaggacaagtttcgctcagactcacttttgttctttcttaactagatgaggaactttttgcattgtattcctatat 195  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36383817 attttcattataccagcttccaaggaggacaagtttcgctcagactcacttttgttctttcttaactagatgaggaactttttgcattgtaatcctatat 36383718  T
Q  196 tacaagactaggttccatcggacacaggtgcgaagctatgaaaccatgatcagaataagacagacgtgagcccagaggtgtagaagcatttaagggcctt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36383717 tacaagactaggttccatcggacacaggtgcgaagctatgaaaccatgatcagaataagacagacgtgagcccagaggtgtagaagcatttaagggcctt 36383618  T
Q  296 tagagtagaggttgcataagtaggacataccatactagaaagatcaca 343  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36383617 tagagtagaggttgcataagtaggacataccgtactagaaagatcaca 36383570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 24876533 - 24876452
Alignment:
Q  15 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24876533 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctgtattttccgctgctactcaaca 24876452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 24881035 - 24880954
Alignment:
Q  15 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24881035 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttacgctgctactcaaca 24880954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 24886370 - 24886289
Alignment:
Q  15 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24886370 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctgtattttccgctgctactcaaca 24886289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 14087768 - 14087691
Alignment:
Q  19 ctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14087768 ctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 14087691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 14092300 - 14092223
Alignment:
Q  19 ctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14092300 ctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 14092223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 46454186 - 46454263
Alignment:
Q  19 ctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46454186 ctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 46454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 46461582 - 46461663
Alignment:
Q  15 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 96  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46461582 ctagctacattcatgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctgctcaaca 46461663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 9955382 - 9955463
Alignment:
Q  15 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 96  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9955382 ctagctacattcgtgttcaactttaatgagtacatagttcatattattattagaagtctatattttccgctgctactcaaca 9955463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 32213556 - 32213508
Alignment:
Q  24 ttcgtgttcaactttagtgagtgcatagttcatattattattagaagtc 72  Q
    |||||||||| ||||||| |||||||| ||||||| |||||||||||||    
T  32213556 ttcgtgttcagctttagtaagtgcatatttcatatcattattagaagtc 32213508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 32213350 - 32213385
Alignment:
Q  24 ttcgtgttcaactttagtgagtgcatagttcatatt 59  Q
    ||||||||||||||||||||||||||| ||||||||    
T  32213350 ttcgtgttcaactttagtgagtgcatatttcatatt 32213385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 33681867 - 33681946
Alignment:
Q  15 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaacat 97  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  33681867 ctagctacattcgtgttcaactttagtgagtgcatagttca---tattattagaagtctatattttccgctgctactcaacat 33681946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 33698924 - 33699003
Alignment:
Q  15 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaacat 97  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  33698924 ctagctacattcgtgttcaactttagtgagtgcatagttca---tattattagaagtctatattttccgctgctactcaacat 33699003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 9360954 - 9360905
Alignment:
Q  15 ctagctacattcgtgttcaactttagtgagtgcatagttcatattattat 64  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9360954 ctagctacattcatgttcaactttagtgagtgcatagttcatattattat 9360905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University