View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_low_2 (Length: 579)
Name: NF9926_low_2
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 6 - 563
Target Start/End: Complemental strand, 2862454 - 2861897
Alignment:
| Q |
6 |
agcagcacagacaaacataataaaagactcttgtttactattcatatctttagaagccatagccaactcaatcccagcaaacaaaagcaacacccctaat |
105 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2862454 |
agcagcacaaacaaacataataaaagactcttgtttactattcatatctttagaagccatagccaattcaatcccagcaaacaaaagcaacacccctaat |
2862355 |
T |
|
| Q |
106 |
atgccaataggaaactgacccaaaattcttccaaaagagttcccaaaaaccaaagcaatcaacaatttaccaaccccaagaaaaacaacagaagcaccac |
205 |
Q |
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| T |
2862354 |
atgccaataggaaactgacccaaaattcttccaaaagagttcccaaaaaccaaagcaatcaacaatttaccaaccccaagaaaaacaacagaagcaccac |
2862255 |
T |
|
| Q |
206 |
tcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaacaaccaacaaaattcatcactccaacaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2862254 |
tcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaacaaccaacaaaattcatcactccaacact |
2862155 |
T |
|
| Q |
306 |
cactgaaaccttcatagcagaagcttctctgtccggaaataaatctccggacagtttacaaaccgcaatgactgaattcaaaatggataaaggaatttgt |
405 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
2862154 |
cactgaaaccttcatagcagaagcttctctgtcgggaaataaatctccggacagtttacaaaccgcaattactgaattcaaaatcgataaaggaatttgt |
2862055 |
T |
|
| Q |
406 |
ggaattgcagctctaacaaatccaactttaaaatcatcccatgtaattctcacaagcttaatcttcgacggcccaaatttcaaatcatgaaaaatcgaag |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2862054 |
ggaattgcagctctaacaaatccaactttaaaatcatcccatgtaattctcacaagcttaatcttcgacggcccaaatttcaaatcatgaaaaatcgaag |
2861955 |
T |
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| Q |
506 |
gatcacgaataaaacacaataacaatccaaacaaaaacacaatcaaagccgaaggtat |
563 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2861954 |
gatcacgaataaaacacaataacaatccaaacaaaaacacaatcaaagccgaaggtat |
2861897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 1875793 - 1875682
Alignment:
| Q |
202 |
ccactcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaacaaccaacaaaattcatcactccaa |
301 |
Q |
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|||||||| || ||||| ||||||| || || | ||||||||| ||||||||| | ||||| |||||||||||||||||||| |||||||||| |||| |
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| T |
1875793 |
ccactccttccaccaaatttatactgtcctgctagtccaccagcaccatggcaagatggcattgcaccaaaccaacaaccaaccaaattcatcaacccaa |
1875694 |
T |
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| Q |
302 |
caatcactgaaa |
313 |
Q |
| |
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| ||||||||| |
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| T |
1875693 |
ctgtcactgaaa |
1875682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 1808189 - 1808078
Alignment:
| Q |
202 |
ccactcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaacaaccaacaaaattcatcactccaa |
301 |
Q |
| |
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|||||||| |||||||| ||||||| || || | ||| ||||| ||||| ||| |||| ||||||||||||| ||||||| |||||||| | ||||| |
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| T |
1808189 |
ccactccttcctccaaatttatactgtcctgctagtcctccagcaccatgacaagttggcacagcaccaaaccaagaaccaactaaattcattagtccaa |
1808090 |
T |
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| Q |
302 |
caatcactgaaa |
313 |
Q |
| |
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| T |
1808089 |
ctgtcactgaaa |
1808078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 49993022 - 49993100
Alignment:
| Q |
44 |
tattcatatctttagaagccatagccaactcaatcccagcaaacaaaagcaacacccctaatatgccaataggaaactg |
122 |
Q |
| |
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|||||||||| || |||||||||| || ||||||||||||||||| | |||||||||||| || || | ||||||||| |
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| T |
49993022 |
tattcatatccctacaagccatagctaattcaatcccagcaaacaacaacaacacccctaaaattcccacaggaaactg |
49993100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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